Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011359.1 Corchorus olitorius cultivar O-4 contig11392, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16478

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--182
40
4.5
38
78
15
150
34
17
16
30
1.93
81--364
42
6.7
43
84
6
346
29
15
15
38
1.89
167--364
85
2.3
85
95
0
360
26
15
15
42
1.87
387--492
50
2.2
49
85
14
148
40
15
15
29
1.87
1188--1230
19
2.3
19
87
0
59
62
16
4
16
1.48
1571--1740
85
2.0
85
98
0
331
33
27
12
27
1.92
4012--4068
22
2.6
21
86
5
78
50
12
14
22
1.75
4333--4493
63
2.6
62
87
3
223
26
24
12
37
1.91
4407--4582
58
3.0
58
79
10
187
25
23
13
37
1.92
4562--4737
60
2.9
60
86
6
212
28
26
11
34
1.91
5958--6002
6
7.0
6
85
12
54
4
15
2
77
1.02
6600--6629
10
3.0
10
100
0
60
0
10
0
90
0.47
7325--7374
7
6.9
7
82
8
55
6
14
0
80
0.90
7325--7372
23
2.0
24
92
4
80
6
14
0
79
0.92
11358--11402
23
2.0
21
83
8
54
15
22
15
46
1.83
12898--13260
29
12.5
29
81
3
318
37
22
17
22
1.94
13045--13247
88
2.3
87
86
7
270
36
21
18
23
1.95
12898--13255
146
2.5
146
78
5
332
37
22
17
22
1.93
13755--14565
91
9.0
91
84
5
945
47
18
13
20
1.82
13761--14565
121
6.7
120
92
2
1102
47
18
13
20
1.82
13755--14565
30
26.9
30
85
4
983
47
18
13
20
1.82
14833--15306
36
13.5
35
78
7
401
40
18
20
20
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14855--14981
63
2.0
63
83
3
157
41
19
18
19
1.90
14923--15307
71
5.4
70
84
3
331
40
19
20
19
1.92
14923--15307
106
3.6
106
81
5
393
40
19
20
19
1.92

Tables:   1

The End!