Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011360.1 Corchorus olitorius cultivar O-4 contig11393, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52720

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17216--17252
2
18.0
2
94
5
65
48
2
0
48
1.15
19571--19638
27
2.5
27
95
0
118
19
16
26
38
1.92
23736--23786
16
3.2
16
86
2
68
62
11
7
17
1.51
31606--31698
48
1.9
48
82
6
116
35
11
23
29
1.90
31993--32090
22
4.5
21
74
13
74
38
11
12
37
1.79
31993--32090
43
2.2
44
81
1
117
38
11
12
37
1.79
31965--32090
43
3.0
43
77
8
116
40
10
14
34
1.80
37588--37617
15
2.0
15
100
0
60
6
6
6
80
1.04
38390--38426
18
2.1
18
89
0
56
45
5
10
37
1.62
39268--39321
19
2.6
21
77
19
60
38
3
18
38
1.69
46327--46383
29
2.0
29
92
0
96
28
3
43
24
1.70
46495--46532
2
19.0
2
100
0
76
50
0
0
50
1.00
50028--50121
45
2.2
43
86
7
129
37
20
7
35
1.81
50735--50838
51
2.0
51
98
0
199
39
12
8
39
1.74

Tables:   1

The End!