Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011362.1 Corchorus olitorius cultivar O-4 contig11395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 762

Length: 1270
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.30


Found at i:365 original size:21 final size:21

Alignment explanation


    Indices: 336--377  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        326 ACACCCTAGC

                                 
        336 ACTAAAACTAGAAGAAAAAAA
          1 ACTAAAACTAGAAGAAAAAAA

                *          *     
        357 ACTAGAACTAGAAGAGAAAAA
          1 ACTAAAACTAGAAGAAAAAAA

        378 GAAGAAGAGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.67, C:0.10, G:0.14, T:0.10


Consensus pattern (21 bp):   
ACTAAAACTAGAAGAAAAAAA
Done.