Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001137.1 Corchorus olitorius cultivar O-4 contig01137, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 942

Length: 1570
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.34


Found at i:1435 original size:20 final size:20

Alignment explanation


    Indices: 1410--1453  Score: 79
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       1400 TTTTTTTCTA

                                
       1410 TTCTTCCACCTCCTCTCTTC
          1 TTCTTCCACCTCCTCTCTTC

                   *            
       1430 TTCTTCCGCCTCCTCTCTTC
          1 TTCTTCCACCTCCTCTCTTC

                
       1450 TTCT
          1 TTCT

       1454 CCCCCTTTTC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  20   23  1.00

ACGTcount: A:0.02, C:0.48, G:0.02, T:0.48


Consensus pattern (20 bp):   
TTCTTCCACCTCCTCTCTTC
Done.