Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011371.1 Corchorus olitorius cultivar O-4 contig11404, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5025
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31


Found at i:2170 original size:2 final size:2

Alignment explanation


    Indices: 2163--2200  Score: 69
    Period size: 2  Copynumber: 19.5  Consensus size: 2

       2153 ATTGTAAGTA

                                                                      
       2163 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       2201 GATGATGCCT


Statistics
Matches: 35,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   34  0.97

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.