Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011374.1 Corchorus olitorius cultivar O-4 contig11407, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1207
ACGTcount: A:0.15, C:0.23, G:0.20, T:0.41


Found at i:113 original size:48 final size:48

Alignment explanation


    Indices: 1--1207  Score: 1799
    Period size: 48  Copynumber: 25.1  Consensus size: 48

                   *                               *          
          1 TTCCCGGCCGGAAGGTGTTGTTTTCAACATTGTATTACAAT-TTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATT-C-CTGTTTTGCCC

                 *   *      *                *    *         
         50 TTCCCAGTCCGAAGGTTTTGTTTTCAACATTGTGTTCCCGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

               *                                            
         98 TTCACGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

              *                            *         *      
        146 TTTCCGGTCGGAAGGTGTTGTTTTCAACATTTTATTCCTGTCTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                 *          *                     **        
        194 TTCCCAGTCGGAAGGTATTGTTTTCAACATTGTATTCCAATTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

               * *                                *         
        242 TTCTCAGTCGGAAGGTGTTGTTTTCAACATTGTATTCCCGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                  *      *                               *   
        290 TTCCCGATCGGAAAGTGTTGTTTTCAACATTGTATT-CTCGTTTTTCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCT-GTTTTGCCC

                                                            
        338 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                                                            
        386 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                                           *                
        434 TT-CCGGTCGGAAGGTGTTGTTTTCAACATTATATTCCTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                 *          *                     **        
        481 TTCCCAGTCGGAAGGTATTGTTTTCAACATTGTATTCCAATTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

               * *                                *         
        529 TTCTCAGTCGGAAGGTGTTGTTTTCAACATTGTATTCCCGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                     *                            **        
        577 TTCCCGGTCAGAAGGTGTTGTTTTCAACATTGTATTCCAATTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                 *   *      *                     *         
        625 TTCCCAGTCCGAAGGTTTTGTTTTCAACATTGTATTCCCGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

               *                                            
        673 TTCACGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

              *                                      *      
        721 TTTCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTCTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                                            *         *      
        769 TTCCCGGTCGGAAGGTTGTTGTTTTCAACATTTTATTCCTGTCTTGCCC
          1 TTCCCGGTCGGAAGG-TGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                **    *     *                     **        
        818 TTCCAAGTCGAAAGGTATTGTTTTCAACATTGTATTCCAATTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

               * *                                *         
        866 TTCTCAGTCGGAAGGTGTTGTTTTCAACATTGTATTCCCGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                  *                                         
        914 TTCCCGATCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                  *  *                            *         
        962 TTCCCGATCTGAAGGTGTTGTTTTCAACATTGTATTCCCGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                                 *                **        
       1010 TTCCCGGTCGGAAGGTGTTGTATTCAACATTGTATTCCAATTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                                                            
       1058 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                                           *      *         
       1106 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTATATTCCCGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                      *                    *     *          
       1154 TTCCCGGTCGAAAGGTGTTGTTTTCAACATTTTATTCTTGTTTTGCCC
          1 TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

                  
       1202 TTCCCG
          1 TTCCCG


Statistics
Matches: 1052,  Mismatches: 101, Indels: 11
        0.90            0.09        0.01

Matches are distributed among these distances:
  47   47  0.04
  48  928  0.88
  49   77  0.07

ACGTcount: A:0.15, C:0.23, G:0.20, T:0.41


Consensus pattern (48 bp):   
TTCCCGGTCGGAAGGTGTTGTTTTCAACATTGTATTCCTGTTTTGCCC

Done.