Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011378.1 Corchorus olitorius cultivar O-4 contig11411, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1989
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31


Found at i:352 original size:21 final size:21

Alignment explanation


    Indices: 328--374  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        318 CCGCTTGACG

                                  
        328 CCCAGGCGA-AATGCCTCAGCA
          1 CCCAGGCGACAA-GCCTCAGCA

                         *      *
        349 CCCAGGCGACAAGGCTCAGCG
          1 CCCAGGCGACAAGCCTCAGCA

                 
        370 CCCAG
          1 CCCAG

        375 CTCGATCCCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   21  0.91
  22    2  0.09

ACGTcount: A:0.26, C:0.40, G:0.28, T:0.06


Consensus pattern (21 bp):   
CCCAGGCGACAAGCCTCAGCA
Done.