Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011384.1 Corchorus olitorius cultivar O-4 contig11417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2545
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Found at i:1199 original size:154 final size:154
Alignment explanation
Indices: 917--2544 Score: 2433
Period size: 154 Copynumber: 10.6 Consensus size: 154
907 ATTCGTATCA
* *
917 GGACTAATCTCACCAAAATGATTGTAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * * *
982 GCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAACAACAAGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTC
*
1047 CAAATGAGCTAAGAACTTCACAGT
131 CAAATGAGCTAAAAACTTCACAGT
* * *
1071 GGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTTAAGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * * *
1136 GTCAAATCGAAGACGGTTCAAAACGTCACTAATGGGCCCTGATAGGCACAAAATAACAGGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTC
* *
1201 CAAATGACCT-AAAATTTCACAGT
131 CAAATGAGCTAAAAACTTCACAGT
* * *
1224 GGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* ** *
1289 GCCAAACCGAAGACGATTCAAAACAAAACTAAAGGGCCCTGATAGGTC-CAAAATAACAAGTGTT
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGG-CACAAAATAACAAGTGTT
1353 CCAAATGAGCTAAAAACTTCACAGT
130 CCAAATGAGCTAAAAACTTCACAGT
* **
1378 GGACTAATCTCACCAAAATGATTATAGTTATGCCATAAACAATGGAATCAAAAGCATTGAGGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * * * * *
1443 GTCAAATCAAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGG-ACCAAAATAATAAGTGTT
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCA-CAAAATAACAAGTGTT
* **
1507 CCAAATGATCTAAAAACTTCACAAA
130 CCAAATGAGCTAAAAACTTCACAGT
** * * *
1532 GCCCTAATCTCAGCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGATT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * * * *
1597 GCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAAGCACAAAATAACAGGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTC
1662 CAAATGAGCTAAAAACTTCACAGT
131 CAAATGAGCTAAAAACTTCACAGT
* * *
1686 GGACTGATCTCACTAAAATGATTATACTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* ** * * * * *
1751 GCCAAATCAAAGACGATTCAAAACAAAACAAAAGGGCCCTAATAGGTC-CAAAATAATAAGTATT
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGG-CACAAAATAACAAGTGTT
* * *
1815 TCAAATGAGCTAAGAACCTCACAGT
130 CCAAATGAGCTAAAAACTTCACAGT
*
1840 GGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC-TTGAGGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* *
1904 GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTGATAGGCCCAAAATAACAAGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTC
*
1969 CAAATGAGCTAAAAACTTTACAGT
131 CAAATGAGCTAAAAACTTCACAGT
1993 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA-GGTT
* *
2058 T-CCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTGATAGGCCCAAAATAACAAGTGTT
65 TGCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTT
2122 CCAAATGAGCTAAAAACTTCACAGT
130 CCAAATGAGCTAAAAACTTCACAGT
* *
2147 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * *
2212 GCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAATAACAAGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTC
*
2277 CAAATGAGCTTAAAACTTCACAGT
131 CAAATGAGCTAAAAACTTCACAGT
* *
2301 GGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAAGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * * * *
2366 GCCAAATCGAAGACGATTCAAAACGTCACTAACGCGCCCTGATAGGCCCAAAATAACAAATGTTC
66 GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTC
*
2431 CAAATGAGCTAAAAA-TTTACAGT
131 CAAATGAGCTAAAAACTTCACAGT
* *
2454 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAAGGGAAAGAAAAGCATCGAGGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
*
2519 GACAAATCGAAGACGATTCAAAACGT
66 GCCAAATCGAAGACGATTCAAAACGT
2545 T
Statistics
Matches: 1330, Mismatches: 134, Indels: 21
0.90 0.09 0.01
Matches are distributed among these distances:
152 1 0.00
153 370 0.28
154 952 0.72
155 7 0.01
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (154 bp):
GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
GCCAAATCGAAGACGATTCAAAACGTAACTAATGGGCCCTGATAGGCACAAAATAACAAGTGTTC
CAAATGAGCTAAAAACTTCACAGT
Found at i:1901 original size:461 final size:461
Alignment explanation
Indices: 917--2544 Score: 2548
Period size: 461 Copynumber: 3.5 Consensus size: 461
907 ATTCGTATCA
* *
917 GGACTAATCTCACCAAAATGATTGTAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
** * *
982 GCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAACAACAAGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC
* *
1047 CAAATGAGCTAAGAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACA
131 CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
** * * *
1112 ATGGAAAGAAAAGCATTTAAGTTTGTCAAATCGAAGACGGTTCAAAACGTCACTAATGGGCCCTG
196 ATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTG
* *
1177 ATAGGCACAAAATAACAGGTGTTCCAAATGACCT-AAAATTTCACAGTGGACTAATCTCACTAAA
261 ATAGGCACAAAATAACAGGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAAA
*
1241 ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAACCGAAGACGAT
326 ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGAT
*
1306 TCAAAACAAAACTAAAGGGCCCTGATAGGTCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACT
391 TCAAAACAAAACTAAAGGGCCCTAATAGGTCCAAAATAACAAGTGTTCCAAATGAGCT-AAAACT
1371 TCACAGT
455 TCACAGT
* **
1378 GGACTAATCTCACCAAAATGATTATAGTTATGCCATAAACAATGGAATCAAAAGCATTGAGGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * * *
1443 GTCAAATCAAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGACCAAAATAATAAGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC
* ** ** *
1508 CAAATGATCTAAAAACTTCACAAAGCCCTAATCTCAGCAAAATGATTATAGTTAGGCCATAAACA
131 CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
* ** *
1573 ATGGAAAGAAAAGCATCGAGGATTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCG
196 ATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTG
* * *
1638 AAAAGCACAAAATAACAGGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTGATCTCACTAAA
261 ATAGGCACAAAATAACAGGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAAA
* * * *
1703 ATGATTATACTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCAAAGACGAT
326 ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGAT
* * * * *
1768 TCAAAACAAAACAAAAGGGCCCTAATAGGTCCAAAATAATAAGTATTTCAAATGAGCTAAGAACC
391 TCAAAACAAAACTAAAGGGCCCTAATAGGTCCAAAATAACAAGTGTTCCAAATGAGCTAA-AACT
1833 TCACAGT
455 TCACAGT
*
1840 GGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC-TTGAGGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* *
1904 GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTGATAGGCCCAAAATAACAAGTGTTC
66 GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC
*
1969 CAAATGAGCTAAAAACTTTACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
131 CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
*
2034 ATGGAAAGAAAAGCATTGAGGGTTT-CCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCT
196 ATGGAAAGAAAAGCATCGA-GGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCT
* * *
2098 GATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAA
260 GATAGGCACAAAATAACAGGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAA
2163 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGA
325 AATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGA
** * *
2228 TTCAAAACGGAACTAATGGGCCCCGAA-AGG-CACAAAATAACAAGTGTTCCAAATGAGCTTAAA
390 TTCAAAACAAAACTAAAGGG-CCCTAATAGGTC-CAAAATAACAAGTGTTCCAAATGAGC-TAAA
2291 ACTTCACAGT
452 ACTTCACAGT
* *
2301 GGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAAGTTT
1 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
* * * * *
2366 GCCAAATCGAAGACGATTCAAAACGTCACTAACGCGCCCTGATAGGCCCAAAATAACAAATGTTC
66 GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC
*
2431 CAAATGAGCTAAAAA-TTTACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
131 CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
* *
2495 AGGGAAAGAAAAGCATCGAGGTTTGACAAATCGAAGACGATTCAAAACGT
196 ATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTCAAAACGT
2545 T
Statistics
Matches: 1065, Mismatches: 94, Indels: 16
0.91 0.08 0.01
Matches are distributed among these distances:
460 6 0.01
461 760 0.71
462 299 0.28
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (461 bp):
GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTT
GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGCCCAAAATAACAAGTGTTC
CAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACA
ATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTG
ATAGGCACAAAATAACAGGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAAA
ATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAATCGAAGACGAT
TCAAAACAAAACTAAAGGGCCCTAATAGGTCCAAAATAACAAGTGTTCCAAATGAGCTAAAACTT
CACAGT
Found at i:2090 original size:615 final size:614
Alignment explanation
Indices: 919--2544 Score: 2653
Period size: 615 Copynumber: 2.6 Consensus size: 614
909 TCGTATCAGG
* *
919 ACTAATCTCACCAAAATGATTGTAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGC
1 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGC
*
984 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAACAACAAGTGTTCCA
66 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAATAACAAGTGTTCCA
*
1049 AATGAGCTAAGAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAAT
131 AATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAAT
* * * *
1114 GGAAAGAAAAGCATTTAAGTTTGTCAAATCGAAGACGGTTCAAAACGTCACTAATGGGCCCTGAT
196 GGAAAGAAAAGCATTGAAGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCTGAT
* * *
1179 AGGCACAAAATAACAGGTGTTCCAAATGACCTAAAATTTCACAGTGGACTAATCTCACTAAAATG
261 AGGC-CAAAATAACAAGTGTTCCAAATGAGCTAAAAATTCACAGTGGACTAATCTCACTAAAATG
* *
1244 ATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGCCAAACCGAAGACGATTCA
325 ATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTCA
** *
1309 AAACAAAACTAAAGGGCCCTGATAGGTCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCA
390 AAACGTAACTAAAGGGCCCTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCA
* *
1374 CAGTGGACTAATCTCACCAAAATGATTATAGTTATGCCATAAACAATGGAATCAAAAGCATTGAG
455 CAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAACAAAAGCATTGAG
* *
1439 GTTTGTCAAATCAAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGACCAAAATAATAAGT
520 GTTTGCCAAATCAAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGACCAAAATAACAAGT
*
1504 GTTCCAAATGATCTAAAAACTTCACAAAGC
585 GTTCCAAATGAGCTAAAAACTTCACAAAGC
* * *
1534 CCTAATCTCAGCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGATTGC
1 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGC
* *
1599 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAAGCACAAAATAACAGGTGTTCCA
66 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAATAACAAGTGTTCCA
* *
1664 AATGAGCTAAAAACTTCACAGTGGACTGATCTCACTAAAATGATTATACTTAGGCCATAAACAAT
131 AATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAAT
* * *** * *
1729 GGAAAGAAAAGCATTGAGGTTTGCCAAATCAAAGACGATTCAAAACAAAACAAAAGGGCCCTAAT
196 GGAAAGAAAAGCATTGAAGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCTGAT
* * * **
1794 AGGTCCAAAATAATAAGTATTTCAAATGAGCTAAGAACCTCACAGTGGACTAATCTCACTAAAAT
261 AGG-CCAAAATAACAAGTGTTCCAAATGAGCTAA-AAATTCACAGTGGACTAATCTCACTAAAAT
*
1859 GATTATAGTTAGGCCATAAACAATGGAAAGAAAAGC-TTGAGGTTTGCCAAATCGAAGACGATTC
324 GATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTC
* * *
1923 AAAACGTCACTAATGGGCCCTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTT
389 AAAACGTAACTAAAGGGCCCTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTC
*
1988 ACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGA
454 ACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAACAAAAGCATTGA
* * * *
2053 GGGTTT-CCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCTGATAGGCCCAAAATAACAA
519 -GGTTTGCCAAATCAAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGACCAAAATAACAA
** *
2117 GTGTTCCAAATGAGCTAAAAACTTCACAGTGG
583 GTGTTCCAAATGAGCTAAAAACTTCACAAAGC
2149 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGC
1 ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGC
2214 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAATAACAAGTGTTCCA
66 CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAATAACAAGTGTTCCA
*
2279 AATGAGCTTAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAAT
131 AATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAAT
* *
2344 GGAAAGAAAAGCATTGAAGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAACGCGCCCTGAT
196 GGAAAGAAAAGCATTGAAGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCTGAT
* * *
2409 AGGCCCAAAATAACAAATGTTCCAAATGAGCTAAAAATTTACAGTGGACTAATCTCACCAAAATG
261 AGG-CCAAAATAACAAGTGTTCCAAATGAGCTAAAAATTCACAGTGGACTAATCTCACTAAAATG
* *
2474 ATTATAGTTAGGCCATAAACAAGGGAAAGAAAAGCATCGAGGTTTGACAAATCGAAGACGATTCA
325 ATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTCA
2539 AAACGT
390 AAACGT
2545 T
Statistics
Matches: 927, Mismatches: 80, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
614 61 0.07
615 796 0.86
616 70 0.08
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (614 bp):
ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGGTTGC
CAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCACAAAATAACAAGTGTTCCA
AATGAGCTAAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAAT
GGAAAGAAAAGCATTGAAGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAAAGGGCCCTGAT
AGGCCAAAATAACAAGTGTTCCAAATGAGCTAAAAATTCACAGTGGACTAATCTCACTAAAATGA
TTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATCGAGGTTTGCCAAATCGAAGACGATTCAA
AACGTAACTAAAGGGCCCTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCAC
AGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAACAAAAGCATTGAGG
TTTGCCAAATCAAAGACGATTCAAAACGTCACTAATGGGCCCCGAAAGGACCAAAATAACAAGTG
TTCCAAATGAGCTAAAAACTTCACAAAGC
Done.