Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011385.1 Corchorus olitorius cultivar O-4 contig11418, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2274
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33


Found at i:649 original size:21 final size:21

Alignment explanation


    Indices: 623--756  Score: 191
    Period size: 21  Copynumber: 6.4  Consensus size: 21

        613 TGCTAGAAGT

                                  
        623 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                                  
        644 TCATTGGAGCAA-GTTCCAAGC
          1 TCATTGGAG-AAGGTTCCAAGC

                     *          *
        665 TCATTGGAGCAGGTTCCAAGT
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        686 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                                *
        707 TCATTGGAGAAGGTTCCAAGA
          1 TCATTGGAGAAGGTTCCAAGC

                           *     
        728 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTCCAAGC

                    
        749 TCATTGGA
          1 TCATTGGA

        757 AATGCCTAAG


Statistics
Matches: 106,  Mismatches: 6, Indels: 2
        0.93            0.05        0.02

Matches are distributed among these distances:
  20    1  0.01
  21  105  0.99

ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTCCAAGC

Done.