Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011389.1 Corchorus olitorius cultivar O-4 contig11422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6140
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:1131 original size:27 final size:27

Alignment explanation


    Indices: 1099--1170  Score: 117
    Period size: 27  Copynumber: 2.7  Consensus size: 27

       1089 AGTGATCCTA

                                       
       1099 AAATGACCAAAATGCCCCTGAACGTGC
          1 AAATGACCAAAATGCCCCTGAACGTGC

                                * *    
       1126 AAATGACCAAAATGCCCCTGGATGTGC
          1 AAATGACCAAAATGCCCCTGAACGTGC

                         *    
       1153 AAATGACCAAAATACCCC
          1 AAATGACCAAAATGCCCC

       1171 CTAGATGACC


Statistics
Matches: 42,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   42  1.00

ACGTcount: A:0.39, C:0.29, G:0.17, T:0.15


Consensus pattern (27 bp):   
AAATGACCAAAATGCCCCTGAACGTGC

Found at i:1822 original size:22 final size:22

Alignment explanation


    Indices: 1803--1844  Score: 66
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1793 GGCGCGGGAC

                                  
       1803 ATGGCCGAGTCATGACCGGGCT
          1 ATGGCCGAGTCATGACCGGGCT

                  *       *     
       1825 ATGGCCTAGTCATGTCCGGG
          1 ATGGCCGAGTCATGACCGGG

       1845 TGCCACCGAG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   18  1.00

ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21


Consensus pattern (22 bp):   
ATGGCCGAGTCATGACCGGGCT
Done.