Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011390.1 Corchorus olitorius cultivar O-4 contig11423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37415

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3164--3193
14
2.1
15
93
6
53
13
13
3
70
1.30
4475--4517
18
2.3
19
84
4
52
74
6
9
9
1.22
6290--6370
5
16.2
5
100
0
162
39
0
0
60
0.97
8440--8473
5
6.8
5
100
0
68
41
0
0
58
0.98
12275--12301
13
2.1
13
100
0
54
33
22
22
22
1.97
15369--15395
6
4.5
6
100
0
54
37
33
0
29
1.58
16009--16126
57
2.1
57
88
3
175
33
16
22
27
1.95
17004--17221
109
2.0
109
95
0
391
30
10
14
44
1.79
17372--17416
3
15.0
3
100
0
90
33
0
0
66
0.92
21373--21445
36
2.0
36
100
0
146
41
5
13
39
1.68
21373--21431
18
3.3
18
64
17
50
42
5
13
38
1.66
21385--21443
18
3.2
19
63
18
52
44
5
13
37
1.66
23964--24087
41
3.0
40
72
9
115
40
26
10
22
1.86
23964--24145
85
2.2
85
85
4
246
40
25
10
23
1.86
26328--26379
21
2.5
21
87
6
70
32
5
26
34
1.80
27742--27777
18
1.9
19
88
5
56
75
0
19
5
1.00
33762--33803
21
2.0
21
95
0
75
33
26
19
21
1.97
34877--34979
52
2.0
52
98
0
197
24
23
28
24
2.00
34933--34976
22
2.0
22
86
0
61
25
25
22
27
2.00
35415--35458
22
2.0
22
86
0
61
27
22
25
25
2.00

Tables:   1

The End!