Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011394.1 Corchorus olitorius cultivar O-4 contig11427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39700

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4497--4555
29
2.0
29
96
0
109
33
13
18
33
1.90
5111--5152
22
1.9
22
85
0
57
28
16
14
40
1.88
8127--8160
17
2.0
17
88
11
52
8
29
17
44
1.79
11030--11054
13
1.9
13
100
0
50
40
8
20
32
1.81
14694--14743
22
2.3
22
92
0
82
14
18
18
50
1.79
16896--16932
8
4.3
9
86
10
51
78
0
21
0
0.75
16885--16929
17
2.8
17
86
6
58
75
0
22
2
0.91
16893--16929
14
2.6
14
91
4
56
78
0
21
0
0.75
17927--18011
31
2.8
30
83
3
116
51
7
18
22
1.70
17928--18011
30
2.8
30
87
3
116
51
7
19
22
1.71
22657--22695
15
2.6
15
88
8
53
48
7
10
33
1.66
25030--25079
14
3.6
14
78
21
52
50
4
36
10
1.55
25644--25965
64
4.9
64
84
5
337
35
13
22
27
1.93
25745--25972
64
3.6
64
92
0
375
33
13
23
28
1.93
26199--26478
101
2.8
98
87
2
371
37
11
25
25
1.90
26199--26478
151
1.8
152
88
2
429
37
11
25
25
1.90
26199--26478
50
5.5
50
87
1
398
37
11
25
25
1.90
31671--32249
40
14.6
39
83
6
616
39
9
20
30
1.84
31668--32225
157
3.5
157
83
3
676
40
8
20
30
1.83
32317--32377
22
2.7
22
89
2
68
22
18
27
31
1.97
32329--32377
22
2.2
22
100
0
98
18
16
34
30
1.93

Tables:   1

The End!