Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011397.1 Corchorus olitorius cultivar O-4 contig11430, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3155
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23


Found at i:2477 original size:35 final size:35

Alignment explanation


    Indices: 2403--2469  Score: 91
    Period size: 35  Copynumber: 1.9  Consensus size: 35

       2393 TGTTTGCGGA

                    *                    *     
       2403 AACAATGGTCTGTAATCCTTATATTTTATTCTCAG
          1 AACAATGGCCTGTAATCCTTATATTTTATCCTCAG

                          *                  
       2438 AACAATGGCCTGTAGTCCTTA-ACTTTTATCCT
          1 AACAATGGCCTGTAATCCTTATA-TTTTATCCT

       2470 TGGAACAACG


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  34    1  0.04
  35   27  0.96

ACGTcount: A:0.27, C:0.21, G:0.12, T:0.40


Consensus pattern (35 bp):   
AACAATGGCCTGTAATCCTTATATTTTATCCTCAG
Done.