Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011401.1 Corchorus olitorius cultivar O-4 contig11434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5949
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:2618 original size:12 final size:12

Alignment explanation


    Indices: 2582--2619  Score: 51
    Period size: 12  Copynumber: 3.1  Consensus size: 12

       2572 AGTCATTTCT

                         
       2582 AAAAAAGAAAAAG
          1 AAAAAAG-AAAAG

                         
       2595 AAAAAA-AGAAAG
          1 AAAAAAGA-AAAG

                        
       2607 AAAAAAGAAAAG
          1 AAAAAAGAAAAG

             
       2619 A
          1 A

       2620 GGATATCAAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 5
        0.82            0.00        0.18

Matches are distributed among these distances:
  11    1  0.04
  12   15  0.65
  13    7  0.30

ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00


Consensus pattern (12 bp):   
AAAAAAGAAAAG
Done.