Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011403.1 Corchorus olitorius cultivar O-4 contig11436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68561

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
589--644
28
2.0
28
89
0
85
41
14
17
26
1.88
1496--1537
21
2.0
21
86
9
59
38
23
21
16
1.93
2932--3108
64
2.8
64
84
0
210
28
23
14
32
1.94
3069--3147
39
2.0
39
92
0
131
34
24
16
25
1.95
3108--3315
64
3.2
64
90
0
317
26
22
16
35
1.95
3005--3211
103
2.0
103
91
0
333
29
23
15
30
1.96
2938--3241
167
1.8
168
89
0
484
28
23
16
31
1.96
3306--3445
67
2.1
66
95
1
253
27
22
11
37
1.89
5666--5705
14
2.8
14
84
3
53
30
15
10
45
1.78
7430--7535
31
3.5
29
78
6
86
24
16
29
29
1.97
8426--8518
46
2.0
45
84
10
118
46
10
18
24
1.81
18960--18998
7
5.4
7
81
6
51
25
2
2
69
1.14
25399--25465
33
2.0
33
100
0
134
20
20
26
31
1.98
37946--37984
18
2.2
18
85
0
51
20
35
10
33
1.86
38523--38560
16
2.5
15
87
8
51
73
0
18
7
1.06
39098--39263
31
5.4
31
84
0
170
18
22
26
33
1.96
39114--39263
62
2.4
62
85
0
192
18
21
26
34
1.96
45166--45210
19
2.4
18
82
10
54
17
11
8
62
1.53
48969--49044
21
3.8
20
68
19
59
55
15
7
21
1.66
56148--56184
18
2.1
18
100
0
74
32
18
21
27
1.97
59021--59093
21
3.6
21
67
14
62
53
15
8
23
1.68
64776--64806
16
1.9
16
93
0
53
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65786--65848
21
3.0
21
100
0
126
33
28
19
19
1.96
67669--67766
33
3.0
32
82
4
124
45
20
9
24
1.80

Tables:   1

The End!