Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011408.1 Corchorus olitorius cultivar O-4 contig11441, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2409
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.32


Found at i:165 original size:19 final size:18

Alignment explanation


    Indices: 132--167  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        122 TTGAAATTAT

                              
        132 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *        
        150 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATGGTCTTCAA

        168 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA
Done.