Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011409.1 Corchorus olitorius cultivar O-4 contig11442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34659

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1025--1056
11
2.6
13
90
9
50
21
0
9
68
1.17
2220--2248
15
2.0
15
93
6
51
51
0
0
48
1.00
3803--3837
12
3.0
12
91
4
54
68
0
2
28
1.04
6719--6882
29
5.7
29
91
0
256
18
14
24
42
1.87
10765--10808
11
3.8
11
84
6
52
79
0
11
9
0.93
12449--12508
31
1.9
31
83
6
77
55
10
16
18
1.69
12509--12579
29
2.4
28
77
9
79
30
26
11
30
1.91
12850--12880
13
2.4
13
94
0
53
6
12
6
74
1.21
13073--13426
177
2.0
177
100
0
708
25
22
14
37
1.92
20263--20291
8
3.8
8
95
4
51
55
10
20
13
1.68
24754--24891
69
2.0
69
98
0
267
32
17
19
30
1.95
24771--24906
69
2.0
69
86
2
177
34
17
18
29
1.94
32336--32399
27
2.3
29
72
5
69
45
0
1
53
1.10
34058--34171
56
2.0
56
94
0
201
41
1
22
34
1.65

Tables:   1

The End!