Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001141.1 Corchorus olitorius cultivar O-4 contig01141, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 842

Length: 1404
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29


Found at i:698 original size:16 final size:17

Alignment explanation


    Indices: 677--710  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        667 GTACGTATAA

                        *    
        677 ATTATAT-TCAATAAAT
          1 ATTATATATCAACAAAT

                             
        693 ATTATATATCAACAAAT
          1 ATTATATATCAACAAAT

             
        710 A
          1 A

        711 AAAAATAAAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    7  0.44
  17    9  0.56

ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38


Consensus pattern (17 bp):   
ATTATATATCAACAAAT

Done.