Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011412.1 Corchorus olitorius cultivar O-4 contig11445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10618
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:8070 original size:13 final size:13

Alignment explanation


    Indices: 8052--8077  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       8042 ATTAGTGTCA

                         
       8052 AATGTGTTATAAT
          1 AATGTGTTATAAT

                         
       8065 AATGTGTTATAAT
          1 AATGTGTTATAAT

       8078 TCATTATTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46


Consensus pattern (13 bp):   
AATGTGTTATAAT

Found at i:10533 original size:25 final size:25

Alignment explanation


    Indices: 10497--10549  Score: 97
    Period size: 25  Copynumber: 2.1  Consensus size: 25

      10487 TACTATTATT

                                     
      10497 TTACTTTACAAAATTACCTCTTCAA
          1 TTACTTTACAAAATTACCTCTTCAA

                   *                 
      10522 TTACTTTGCAAAATTACCTCTTCAA
          1 TTACTTTACAAAATTACCTCTTCAA

               
      10547 TTA
          1 TTA

      10550 TAAGATCTAC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.34, C:0.23, G:0.02, T:0.42


Consensus pattern (25 bp):   
TTACTTTACAAAATTACCTCTTCAA
Done.