Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011416.1 Corchorus olitorius cultivar O-4 contig11449, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2852
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34


Found at i:159 original size:13 final size:13

Alignment explanation


    Indices: 141--168  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        131 TCAAAGGGTG

                         
        141 TTTAACACACCTC
          1 TTTAACACACCTC

                         
        154 TTTAACACACCTC
          1 TTTAACACACCTC

              
        167 TT
          1 TT

        169 GAGATCTATA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36


Consensus pattern (13 bp):   
TTTAACACACCTC
Done.