Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011419.1 Corchorus olitorius cultivar O-4 contig11452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61404

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10569--10778
103
2.0
102
96
0
384
31
23
11
33
1.90
13244--13326
29
2.8
29
75
17
80
18
24
27
30
1.98
17800--17872
32
2.2
33
92
4
121
53
0
23
23
1.46
22995--23056
25
2.6
24
87
5
81
59
4
6
29
1.43
25062--25105
22
2.0
22
86
0
61
27
29
13
29
1.94
26355--26388
11
3.2
11
87
8
52
0
11
2
85
0.71
39274--39312
12
3.6
12
74
25
50
33
15
25
25
1.95
43875--43901
2
13.5
2
100
0
54
48
0
0
51
1.00
47457--47515
19
3.0
19
80
9
82
35
10
20
33
1.86
49307--49384
29
2.6
30
76
15
90
16
14
29
39
1.88
50633--50666
9
3.8
9
100
0
68
82
8
0
8
0.85
52056--52158
43
2.4
44
81
1
118
34
7
14
42
1.75
52078--52154
22
3.5
22
84
5
86
36
6
14
42
1.71
52128--52213
43
2.0
43
93
0
145
45
4
9
40
1.57
52279--52334
25
2.3
25
84
3
69
53
21
7
17
1.67
53095--53127
17
1.9
17
100
0
66
30
12
21
36
1.90
54150--54243
45
2.2
44
88
7
140
37
21
5
36
1.76
55926--55955
15
1.9
16
93
6
53
60
0
26
13
1.34
56837--56905
28
2.5
28
77
15
72
30
18
11
39
1.87

Tables:   1

The End!