Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011420.1 Corchorus olitorius cultivar O-4 contig11453, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1971
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.32


Found at i:1645 original size:21 final size:21

Alignment explanation


    Indices: 1563--1684  Score: 103
    Period size: 21  Copynumber: 6.0  Consensus size: 21

       1553 ATGCTAAGCA

                         *    *  
       1563 AGAA-GTTCCAAGCTCATCGG
          1 AGAAGGTTCCAAGATCATTGG

                   *              
       1583 AGCAA-GATCCAAGATCATT--
          1 AG-AAGGTTCCAAGATCATTGG

                 * *     *   *   
       1602 -GAAGATGCCAAGCTCAAT-G
          1 AGAAGGTTCCAAGATCATTGG

                         *       
       1621 AGAAGGTTCCAAGTTCATTGG
          1 AGAAGGTTCCAAGATCATTGG

                                 
       1642 AGAAGGTTCCAAGATCATTGG
          1 AGAAGGTTCCAAGATCATTGG

                    *    *       
       1663 AGAAGGTTTCAAGCTCATTGG
          1 AGAAGGTTCCAAGATCATTGG

             
       1684 A
          1 A

       1685 ATTGCCTAAG


Statistics
Matches: 82,  Mismatches: 15, Indels: 9
        0.77            0.14        0.08

Matches are distributed among these distances:
  17    2  0.02
  18   10  0.12
  20   16  0.20
  21   54  0.66

ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23


Consensus pattern (21 bp):   
AGAAGGTTCCAAGATCATTGG
Done.