Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011422.1 Corchorus olitorius cultivar O-4 contig11455, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 804

Length: 1340
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33


Found at i:603 original size:14 final size:14

Alignment explanation


    Indices: 584--617  Score: 59
    Period size: 14  Copynumber: 2.4  Consensus size: 14

        574 GCGGCTTGAG

                          
        584 CCGGTTTGGCCGGA
          1 CCGGTTTGGCCGGA

                     *    
        598 CCGGTTTGGTCGGA
          1 CCGGTTTGGCCGGA

                  
        612 CCGGTT
          1 CCGGTT

        618 CGATTCGGTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.06, C:0.26, G:0.41, T:0.26


Consensus pattern (14 bp):   
CCGGTTTGGCCGGA
Done.