Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011423.1 Corchorus olitorius cultivar O-4 contig11456, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5324
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:1740 original size:22 final size:22

Alignment explanation


    Indices: 1712--1754  Score: 77
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1702 AAAAATATGA

                                  
       1712 TTGCTTTTAATCCTAATCTTGG
          1 TTGCTTTTAATCCTAATCTTGG

                        *        
       1734 TTGCTTTTAATCGTAATCTTG
          1 TTGCTTTTAATCCTAATCTTG

       1755 ATTATTATTT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51


Consensus pattern (22 bp):   
TTGCTTTTAATCCTAATCTTGG
Done.