Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011428.1 Corchorus olitorius cultivar O-4 contig11461, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8469
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30


Found at i:5775 original size:17 final size:17

Alignment explanation


    Indices: 5753--5822  Score: 140
    Period size: 17  Copynumber: 4.1  Consensus size: 17

       5743 TCTCGAGCTC

                             
       5753 TGCCTATATGTCTCTCA
          1 TGCCTATATGTCTCTCA

                             
       5770 TGCCTATATGTCTCTCA
          1 TGCCTATATGTCTCTCA

                             
       5787 TGCCTATATGTCTCTCA
          1 TGCCTATATGTCTCTCA

                             
       5804 TGCCTATATGTCTCTCA
          1 TGCCTATATGTCTCTCA

              
       5821 TG
          1 TG

       5823 TAGAAAGCTG


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   53  1.00

ACGTcount: A:0.17, C:0.29, G:0.13, T:0.41


Consensus pattern (17 bp):   
TGCCTATATGTCTCTCA

Done.