Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011433.1 Corchorus olitorius cultivar O-4 contig11466, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1901
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35


Found at i:1402 original size:15 final size:16

Alignment explanation


    Indices: 1372--1409  Score: 60
    Period size: 15  Copynumber: 2.4  Consensus size: 16

       1362 TTACTTTGTT

                   *        
       1372 TTGTTTTCTAGTTTAA
          1 TTGTTTTATAGTTTAA

                            
       1388 TTGTTTTAT-GTTTAA
          1 TTGTTTTATAGTTTAA

                   
       1403 TTGTTTT
          1 TTGTTTT

       1410 CTGTCAACCT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  15   13  0.62
  16    8  0.38

ACGTcount: A:0.16, C:0.03, G:0.13, T:0.68


Consensus pattern (16 bp):   
TTGTTTTATAGTTTAA
Done.