Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011434.1 Corchorus olitorius cultivar O-4 contig11467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54250

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
205--236
2
16.0
2
100
0
64
50
0
0
50
1.00
5228--5277
26
1.9
26
91
0
82
44
42
2
12
1.53
11721--11753
2
16.5
2
100
0
66
48
0
0
51
1.00
15724--15748
2
12.5
2
100
0
50
52
0
0
48
1.00
19004--19610
307
2.0
308
91
0
993
23
15
18
42
1.88
20798--20844
22
2.1
23
84
4
60
17
19
23
40
1.91
21018--21043
11
2.4
11
100
0
52
19
26
26
26
1.99
22081--22117
14
2.6
14
82
0
56
70
0
5
24
1.08
27259--27299
21
1.9
22
85
5
57
43
29
17
9
1.80
28329--28642
163
1.9
161
86
6
440
44
2
11
41
1.53
29653--29753
50
2.0
50
96
0
184
39
14
14
30
1.87
29813--30027
87
2.5
86
82
7
247
36
22
9
31
1.86
30961--30999
3
13.0
3
100
0
78
33
0
0
66
0.92
34499--34534
7
5.1
7
93
0
54
72
13
13
0
1.13
34482--34534
21
2.5
21
81
6
54
71
13
11
3
1.26
42745--43074
166
2.0
160
92
3
543
31
7
21
39
1.81
44655--44679
12
2.1
12
100
0
50
16
8
24
52
1.70
47184--47221
19
2.0
19
100
0
76
52
10
26
10
1.68
51559--51612
27
2.0
28
82
10
67
7
38
0
53
1.29
52015--53044
518
2.0
518
92
1
1699
29
16
13
40
1.87
53345--53550
108
1.9
109
86
6
294
42
20
16
20
1.89
53560--53595
17
2.1
17
100
0
72
30
5
13
50
1.65

Tables:   1

The End!