Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011436.1 Corchorus olitorius cultivar O-4 contig11469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1900
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29


Found at i:238 original size:21 final size:21

Alignment explanation


    Indices: 214--286  Score: 74
    Period size: 21  Copynumber: 3.4  Consensus size: 21

        204 GGCTTGGGAT

                                 
        214 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATGGCC

                *          * **  
        235 GGTGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATGGCC

                *          *      
        256 GGTGGTGGCACGGTGAATGGCC
          1 GGTGATGGCACGG-GCATGGCC

               *     
        278 GGTAATGGC
          1 GGTGATGGC

        287 TTGGTAGTGG


Statistics
Matches: 41,  Mismatches: 10, Indels: 1
        0.79            0.19        0.02

Matches are distributed among these distances:
  21   30  0.73
  22   11  0.27

ACGTcount: A:0.15, C:0.21, G:0.47, T:0.18


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATGGCC
Done.