Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001144.1 Corchorus olitorius cultivar O-4 contig01144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2336
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33


Found at i:2251 original size:3 final size:3

Alignment explanation


    Indices: 2237--2330  Score: 179
    Period size: 3  Copynumber: 31.3  Consensus size: 3

       2227 TTGCTTTCTC

                     *                                                     
       2237 TTA TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA

                                                                         
       2285 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T

       2331 AAATCG


Statistics
Matches: 89,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   3   89  1.00

ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66


Consensus pattern (3 bp):   
TTA

Done.