Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011440.1 Corchorus olitorius cultivar O-4 contig11473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30967

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120--166
3
15.7
3
100
0
94
31
0
0
68
0.90
5182--5290
27
4.1
27
95
1
193
35
27
19
17
1.94
5182--5303
27
4.6
27
92
1
192
36
27
18
17
1.93
22249--22294
23
2.0
23
95
0
83
52
23
13
10
1.71
22584--22659
21
3.6
21
85
8
91
39
25
10
25
1.87
22603--22668
21
3.1
20
80
10
69
42
22
7
27
1.80
29712--29750
14
2.9
13
80
3
51
53
2
2
41
1.28
29736--29992
124
2.0
127
91
6
421
48
1
10
38
1.49

Tables:   1

The End!