Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011446.1 Corchorus olitorius cultivar O-4 contig11479, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3873
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.31


Found at i:3314 original size:17 final size:16

Alignment explanation


    Indices: 3274--3324  Score: 66
    Period size: 17  Copynumber: 3.1  Consensus size: 16

       3264 CATGTAATCT

                    *       
       3274 TTGATCACCGGTGATC
          1 TTGATCACTGGTGATC

                             
       3290 TTGCATCACTGGTGATC
          1 TTG-ATCACTGGTGATC

                      *      
       3307 TTAGATCACTAGTGATC
          1 TT-GATCACTGGTGATC

             
       3324 T
          1 T

       3325 GGGAGGTGAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 3
        0.86            0.06        0.08

Matches are distributed among these distances:
  16    3  0.10
  17   27  0.87
  18    1  0.03

ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35


Consensus pattern (16 bp):   
TTGATCACTGGTGATC
Done.