Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011458.1 Corchorus olitorius cultivar O-4 contig11491, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63800

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5316--5363
25
1.9
25
95
0
87
39
10
18
31
1.85
5501--5630
29
4.7
27
76
10
104
40
24
13
21
1.90
5900--6270
50
7.4
50
92
0
598
28
13
27
31
1.94
6929--7375
50
8.9
50
92
1
689
37
13
16
32
1.88
8013--8053
15
2.7
15
85
7
57
9
0
7
82
0.83
8013--8057
8
5.9
8
80
19
51
11
0
8
80
0.92
8744--8802
15
3.7
15
84
6
64
59
11
13
15
1.62
11477--11551
27
2.7
29
83
10
102
36
26
21
16
1.94
11681--11729
23
2.1
23
88
0
71
40
14
8
36
1.75
18502--18628
16
7.9
16
74
6
96
34
31
19
14
1.92
18523--18630
48
2.2
48
76
12
114
35
30
21
12
1.91
18502--18603
32
3.2
32
84
2
125
34
33
19
12
1.90
18662--18777
54
2.2
51
80
6
135
37
8
1
52
1.42
27948--27977
15
1.9
16
93
6
53
60
3
0
36
1.14
32190--32236
17
2.9
16
87
9
69
44
10
6
38
1.65
33190--33452
130
2.0
133
83
6
331
47
1
10
40
1.48
39526--39584
29
2.0
30
90
3
93
38
23
16
20
1.92
39529--39592
29
2.2
30
83
8
78
42
25
15
17
1.88
39583--39715
28
4.6
28
77
10
115
42
24
15
18
1.88
45930--46287
178
2.0
177
85
5
479
24
21
15
39
1.92
46828--46869
19
2.2
19
86
0
57
21
14
14
50
1.78
47699--47753
23
2.4
23
82
11
60
23
34
10
30
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52186--52256
29
2.4
29
83
4
90
40
28
12
18
1.87
58130--58286
80
2.0
80
94
0
278
32
14
8
43
1.77
58951--59034
42
2.0
40
86
8
116
51
8
3
36
1.50

Tables:   1

The End!