Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011465.1 Corchorus olitorius cultivar O-4 contig11498, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3728
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Found at i:1832 original size:154 final size:154
Alignment explanation
Indices: 1552--3450 Score: 2870
Period size: 154 Copynumber: 12.4 Consensus size: 154
1542 CTCCCGTGTC
* *
1552 AGCTAAAATCTTCACAATGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* * * *
1617 CGAAAAGCAATGAGATTTGCCAAATCGAAGACGATTGAAAACGTCACTAATGGGCCCCGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
1682 CCAAAATAACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
*
1706 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAATTGATTATAGTTAGGCCATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
**
1771 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
1836 CCAAAATAACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
*
1860 AGCTAAAAACTTCACAGTGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* *
1925 AGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAAGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
*
1990 TCAAAAT-ACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
* * *
2013 AGCTAAAAACTTCATAGTGGACTAATCTTACCAAAATGATTATAGTTAGGCCATAAACGATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* *
2078 AGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
2143 CCAAAATAACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
*
2167 AGC-AAAAACCTTCACAGTGGACTAATCTCACCAAAATGATTATTGTTAGGCCATAAACAAT-G-
1 AGCTAAAAA-CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGA
* * *
2229 --G-AAAG--TTGAGATTTGCCAAATTGAAGACGATTCAAAACCTC-CGTAATGGGCCCCGATAG
65 AAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCAC-TAATGGGCCCCGATAG
2288 GCCCAAAATAACAAGTGTTCCAAATG
129 GCCCAAAATAACAAGTGTTCCAAATG
*
2314 AGCTAAAAACTTCTCAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* * ** * * *
2379 AGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAACGGAACAAATGAGCCACGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
2444 CCAAAATAACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
* * *
2468 AGCTAAAAACTTCACAGTGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
*
2533 AGAAAAGCATTGAGGTTTGCCCAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
*
2598 CCAAAATAAGAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
* * * * * * **
2622 AACTCAAAACTTCTCAATGGACTAATCTCACCAAAATGAATATCGTTAGGCCATAAATGATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* ** * * *
2687 AGAAAAGCATTGAGG-TTGCCAAATCGAAAACGATTCAAAACGGAACAAATGAGCCACGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
2751 CCAAAATAACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
* * *
2775 AGCTAAAAACTTCACAGTGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* *
2840 AGAAAAGCATTGAGGTTTGCCCAATCGAAGACGATTCAAAACGTCACTAA-AGGCCCCGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
*
2904 TCAAAATAACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
* * * *
2928 CGCTAAAAACATT-GCAGTGGACTAATCTGACCAAAATGATTATAGTTAGGGCATAAACAATGGA
1 AGCTAAAAAC-TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGA
* **
2992 AAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCCCGATAGG
65 AAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGG
3057 CCCAAAATAACAAGTGTTCCAAATG
130 CCCAAAATAACAAGTGTTCCAAATG
*
3082 AACTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT----AA---AA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* * * ** * * *
3140 AGAAAAGCATTGAGGGTGGCCAAATCGAAAACGATTCAAAACGGAACAAATGAGCCACGATAGGC
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
3205 CCAAAATAACAAGTGTTCCAAATG
131 CCAAAATAACAAGTGTTCCAAATG
* * *
3229 AGCTAAAAACTTCACAGTGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
* *
3294 AGAAAAGCATTGAGGTTTGCCCAATCGAAGACGATTCAAAAACGTCACTAA-AGGCCCCGATAGG
66 AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTC-AAAACGTCACTAATGGGCCCCGATAGG
*
3358 CTCAAAATAACAAGTGTTCCAAATG
130 CCCAAAATAACAAGTGTTCCAAATG
* * * *
3383 CGCTAAAAACATT-GCAGTGGACTAATCTGACCAAAATGATTATAGTTAGGGCATAAACAATGGA
1 AGCTAAAAAC-TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGA
3447 AAGA
65 AAGA
3451 TGACACGGGA
Statistics
Matches: 1579, Mismatches: 141, Indels: 50
0.89 0.08 0.03
Matches are distributed among these distances:
146 1 0.00
147 262 0.17
148 6 0.00
149 4 0.00
150 3 0.00
151 3 0.00
152 4 0.00
153 423 0.27
154 860 0.54
155 13 0.01
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (154 bp):
AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
AGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
CCAAAATAACAAGTGTTCCAAATG
Found at i:2790 original size:608 final size:611
Alignment explanation
Indices: 1552--3446 Score: 2919
Period size: 608 Copynumber: 3.1 Consensus size: 611
1542 CTCCCGTGTC
* *
1552 AGCTAAAATCTTCACAATGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGG-A
* *
1617 CGAAAAGCAATGAGATTTGCCAAATCGAAGACGATTGAAAACGTCACTAATGGGCCCCGATAGGC
65 -GAAAAG-ATTGAGATTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
*
1682 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAATTGATT
128 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATT
*
1747 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
193 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAA
1812 CGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAG
258 CGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAG
*
1877 TGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
323 TGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
* *
1942 TGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAAGCTCAAAAT-ACAAGTGTT
388 TGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTT
*
2006 CCAAATGAGCTAAAAACTTCAT-AGTGGACTAATCTTACCAAAATGATTATAGTTAGGCCATAAA
453 CCAAATGAGCTAAAAACTTC-TCAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAA
*
2070 CGATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAACGTCACTAATGGGCCC
517 CGATGGAAAGAAAAGCATTGA-GGTTGCCAAATCGAAAACGATTCAAAACGTCACAAAT-GGCCC
2135 CGATAGGCCCAAAATAACAAGTGTTCCAAATG
580 CGATAGGCCCAAAATAACAAGTGTTCCAAATG
*
2167 AGC-AAAAACCTTCACAGTGGACTAATCTCACCAAAATGATTATTGTTAGGCCATAAACAAT-G-
1 AGCTAAAAA-CTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGA
* *
2229 G-AAAG-TTGAGATTTGCCAAATTGAAGACGATTCAAAACCTC-CGTAATGGGCCCCGATAGGCC
65 GAAAAGATTGAGATTTGCCAAATCGAAGACGATTCAAAACGTCAC-TAATGGGCCCCGATAGGCC
*
2291 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCTCAGTGGACTAATCTCACCAAAATGATTA
129 CAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTA
*
2356 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAAC
194 TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAAC
* * *
2421 GGAACAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
259 GGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
* * * *
2486 GGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAAAGAAAAGCATTGAGGTTT
324 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
* *
2551 GCCCAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAAGAAGTGTTC
389 GCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTC
* * * * * *
2616 CAAATGAACTCAAAACTTCTCAATGGACTAATCTCACCAAAATGAATATCGTTAGGCCATAAATG
454 CAAATGAGCTAAAAACTTCTCAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACG
** *
2681 ATGGAAAGAAAAGCATTGAGGTTGCCAAATCGAAAACGATTCAAAACGGAACAAATGAGCCACGA
519 ATGGAAAGAAAAGCATTGAGGTTGCCAAATCGAAAACGATTCAAAACGTCACAAATG-GCCCCGA
2746 TAGGCCCAAAATAACAAGTGTTCCAAATG
583 TAGGCCCAAAATAACAAGTGTTCCAAATG
* * *
2775 AGCTAAAAACTTCACAGTGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGG--
* * *
2840 AGAAAAGCATTGAGGTTTGCCCAATCGAAGACGATTCAAAACGTCACTAA-AGGCCCCGATAGGC
64 AGAAAAG-ATTGAGATTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
* * * *
2904 TCAAAATAACAAGTGTTCCAAATGCGCTAAAAACATT-GCAGTGGACTAATCTGACCAAAATGAT
128 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAAC-TTCACAGTGGACTAATCTCACCAAAATGAT
*
2968 TATAGTTAGGGCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAA
192 TATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAA
*
3033 ACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAACTAAAAACTTCACA
257 ACGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACA
3098 GTGGACTAATCTCACCAAAATGATTATAGTTAGGCCAT----AA---AAAGAAAAGCATTGAGGG
322 GTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGG
* * ** * * *
3156 TGGCCAAATCGAAAACGATTCAAAACGGAACAAATGAGCCACGATAGGCCCAAAATAACAAGTGT
387 TTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGT
* * * *
3221 TCCAAATGAGCTAAAAACTTCACAGTGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAA
452 TCCAAATGAGCTAAAAACTTCTCAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAA
* * *
3286 CAATGGAAAGAAAAGCATTGAGGTTTGCCCAATCGAAGACGATTCAAAAACGTCACTAAA-GGCC
517 CGATGGAAAGAAAAGCATTGAGG-TTGCCAAATCGAAAACGATTC-AAAACGTCAC-AAATGGCC
*
3350 CCGATAGGCTCAAAATAACAAGTGTTCCAAATG
579 CCGATAGGCCCAAAATAACAAGTGTTCCAAATG
* * * *
3383 CGCTAAAAACATT-GCAGTGGACTAATCTGACCAAAATGATTATAGTTAGGGCATAAACAATGGA
1 AGCTAAAAAC-TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGA
3447 AAGATGACAC
Statistics
Matches: 1171, Mismatches: 90, Indels: 47
0.90 0.07 0.04
Matches are distributed among these distances:
606 1 0.00
607 152 0.13
608 577 0.49
609 101 0.09
610 9 0.01
611 1 0.00
612 1 0.00
613 4 0.00
614 234 0.20
615 90 0.08
616 1 0.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (611 bp):
AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAG
AAAAGATTGAGATTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCA
AAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATA
GTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGG
AACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGC
CAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCA
AATGAGCTAAAAACTTCTCAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACGAT
GGAAAGAAAAGCATTGAGGTTGCCAAATCGAAAACGATTCAAAACGTCACAAATGGCCCCGATAG
GCCCAAAATAACAAGTGTTCCAAATG
Found at i:3330 original size:915 final size:914
Alignment explanation
Indices: 1552--3450 Score: 3008
Period size: 915 Copynumber: 2.1 Consensus size: 914
1542 CTCCCGTGTC
* *
1552 AGCTAAAATCTTCACAATGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGG-CATAAACAATGGAA
* *
1617 CGAAAAGCAATGAGATTTGCCAAATCGAAGACGATTGAAAACGTCACTAATGGGCCCCGATAGGC
65 AGAAAAGCAATGAGATTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
* * * *
1682 CCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAATTGATT
130 CCAAAATAACAAGTGTTCCAAATGAACTAAAAACTTCACAATGGACTAATCTCACCAAAATGAAT
*
1747 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAGACGATTCAAAA
195 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAAACGATTCAAAA
* * *
1812 CGGAACTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAG
260 CGGAACAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAG
*
1877 TGGACTAATCTCACTAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
325 TGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
*
1942 TGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAAGCTCAAAATACAAGTGTTC
390 TGCCAAATCGAAGACGATTCAAAACGTCACTAATAGGCCCCGATAAGCTCAAAATACAAGTGTTC
* *
2007 CAAATGAGCTAAAAACTTCATAGTGGACTAATCTTACCAAAATGATTATAGTTAGGCCATAAACG
455 CAAATGAGCTAAAAACTTCA-AGTGGACTAATCTGACCAAAATGATTATAGTTAGGCCATAAACA
**
2072 ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAACGTCACTAATGGGCCCCG
519 ATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAACGGAACTAATGGGCCCCG
*
2137 ATAGGCCCAAAATAACAAGTGTTCCAAATGAGCAAAAACCTTCACAGTGGACTAATCTCACCAAA
584 ATAGGCCCAAAATAACAAGTGTTCCAAATGAACAAAAACCTTCACAGTGGACTAATCTCACCAAA
* * * * * *
2202 ATGATTATTGTTAGGCCATAAACAATGGAAAGTTGAGATTTGCCAAATTGAAGACGATTCAAAAC
649 ATGATTATAGTTAGGCCATAAACAATGAAAAGTTGAGAGTGGCCAAATCGAAAACGATTCAAAAC
** * * * *
2267 CTCCGTAATGGGCCCCGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCTCAGT
714 CAACGAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
2332 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
779 GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
2397 GCCAAATCGAAAACGATTC-AAAACGGAAC-AAATGAGCCACGATAGGCCCAAAATAACAAGTGT
844 GCCAAATCGAAAACGATTCAAAAACGGAACTAAA-G-GCCACGATAGGCCCAAAATAACAAGTGT
2460 TCCAAATG
907 TCCAAATG
* *
2468 AGCTAAAAACTTCACAGTGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAA
1 AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGC-ATAAACAATGGAA
* * *
2533 AGAAAAGCATTGAGGTTTGCCCAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
65 AGAAAAGCAATGAGATTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGC
* * *
2598 CCAAAATAAGAAGTGTTCCAAATGAACTCAAAACTTCTCAATGGACTAATCTCACCAAAATGAAT
130 CCAAAATAACAAGTGTTCCAAATGAACTAAAAACTTCACAATGGACTAATCTCACCAAAATGAAT
* **
2663 ATCGTTAGGCCATAAATGATGGAAAGAAAAGCATTGAGG-TTGCCAAATCGAAAACGATTCAAAA
195 ATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAAACGATTCAAAA
2727 CGGAACAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAG
260 CGGAACAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAG
* * * *
2792 TGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAAAGAAAAGCATTGAGGTT
325 TGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGT
* *
2857 TGCCCAATCGAAGACGATTCAAAACGTCACTAA-AGGCCCCGATAGGCTCAAAATAACAAGTGTT
390 TGCCAAATCGAAGACGATTCAAAACGTCACTAATAGGCCCCGATAAGCTCAAAAT-ACAAGTGTT
* *
2921 CCAAATGCGCTAAAAACATTGC-AGTGGACTAATCTGACCAAAATGATTATAGTTAGGGCATAAA
454 CCAAATGAGCTAAAAAC-TT-CAAGTGGACTAATCTGACCAAAATGATTATAGTTAGGCCATAAA
*
2985 CAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAGACGATTCAAAACGGAACTAATGGGCCC
517 CAATGGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAACGGAACTAATGGGCCC
3050 CGATAGGCCCAAAATAACAAGTGTTCCAAATGAACTAAAAA-CTTCACAGTGGACTAATCTCACC
582 CGATAGGCCCAAAATAACAAGTGTTCCAAATGAAC-AAAAACCTTCACAGTGGACTAATCTCACC
*
3114 AAAATGATTATAGTTAGGCCATAAA-AA-GAAAAGCATTGAGGGTGGCCAAATCGAAAACGATTC
646 AAAATGATTATAGTTAGGCCATAAACAATGAAAAG--TTGAGAGTGGCCAAATCGAAAACGATTC
*
3177 AAAACGGAAC-AAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT
709 AAAAC-CAACGAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTT
* * *
3241 CACAGTGGACTAATGTCACCAAAATTATTATAGTTAGGCTATAAACAATGGAAAGAAAAGCATTG
773 CACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTG
* * * ** * *
3306 AGGTTTGCCCAATCGAAGACGATTCAAAAACGTCACTAAAGGCCCCGATAGGCTCAAAATAACAA
838 AGGGTTGCCAAATCGAAAACGATTCAAAAACGGAACTAAAGGCCACGATAGGCCCAAAATAACAA
3371 GTGTTCCAAATG
903 GTGTTCCAAATG
* * *
3383 CGCTAAAAACATT-GCAGTGGACTAATCTGACCAAAATGATTATAGTTAGGGCATAAACAATGGA
1 AGCTAAAAAC-TTCACAGTGGACTAATCTCACCAAAATGATTATAGTTA-GGCATAAACAATGGA
3447 AAGA
64 AAGA
3451 TGACACGGGA
Statistics
Matches: 903, Mismatches: 68, Indels: 25
0.91 0.07 0.03
Matches are distributed among these distances:
913 5 0.01
914 21 0.02
915 638 0.71
916 235 0.26
917 4 0.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.21
Consensus pattern (914 bp):
AGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCATAAACAATGGAAA
GAAAAGCAATGAGATTTGCCAAATCGAAGACGATTCAAAACGTCACTAATGGGCCCCGATAGGCC
CAAAATAACAAGTGTTCCAAATGAACTAAAAACTTCACAATGGACTAATCTCACCAAAATGAATA
TAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGTTTGCCAAATCGAAAACGATTCAAAAC
GGAACAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGT
GGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTT
GCCAAATCGAAGACGATTCAAAACGTCACTAATAGGCCCCGATAAGCTCAAAATACAAGTGTTCC
AAATGAGCTAAAAACTTCAAGTGGACTAATCTGACCAAAATGATTATAGTTAGGCCATAAACAAT
GGAAAGAAAAGCATTGAGGGTTGCCAAATCGAAAACGATTCAAAACGGAACTAATGGGCCCCGAT
AGGCCCAAAATAACAAGTGTTCCAAATGAACAAAAACCTTCACAGTGGACTAATCTCACCAAAAT
GATTATAGTTAGGCCATAAACAATGAAAAGTTGAGAGTGGCCAAATCGAAAACGATTCAAAACCA
ACGAAATGAGCCACGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTAAAAACTTCACAGTGG
ACTAATCTCACCAAAATGATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCATTGAGGGTTGC
CAAATCGAAAACGATTCAAAAACGGAACTAAAGGCCACGATAGGCCCAAAATAACAAGTGTTCCA
AATG
Done.