Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011468.1 Corchorus olitorius cultivar O-4 contig11501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6586
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Found at i:206 original size:52 final size:51
Alignment explanation
Indices: 144--244 Score: 184
Period size: 52 Copynumber: 2.0 Consensus size: 51
134 CCGATGCTTT
*
144 TATTTCCATTGTTTATGGCCTAACTATAATCATTTTAGGTGAGATTAGTCAC
1 TATTTCCATTGTTTATGCCCTAACTATAATCATTTT-GGTGAGATTAGTCAC
196 TATTTCCATTGTTTATGCCCTAACTATAATCATTTTGGTGAGATTAGTC
1 TATTTCCATTGTTTATGCCCTAACTATAATCATTTTGGTGAGATTAGTC
245 CACTGTGAGT
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 13 0.27
52 35 0.73
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.44
Consensus pattern (51 bp):
TATTTCCATTGTTTATGCCCTAACTATAATCATTTTGGTGAGATTAGTCAC
Found at i:357 original size:205 final size:204
Alignment explanation
Indices: 1--397 Score: 625
Period size: 205 Copynumber: 1.9 Consensus size: 204
* *
1 GTTTATGGCCAAACTATAATCATTTTGGTGAGATAGTCCACTGTGAAGTTTTTAGCTCATTTGGA
1 GTTTATGCCCAAACTATAATCATTTTGGTGAGATAGTCCACTGTGAAGTTTATAGCTCATTTGGA
* * * *
66 AAACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCAA
66 AAACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATCTTCGATCTGGCAA
*
131 ACCCCGATGCTTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTTAGGTGAGATTAGTCAC
131 ACCCCAATGCTTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTT-GGTGAGATTAGTCAC
196 TATTTCCATT
195 TATTTCCATT
* *
206 GTTTATGCCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG-AGTTTATAGCTTATTTGG
1 GTTTATGCCCAAACTATAATCATTTTGGTGAGA-TAGTCCACTGTGAAGTTTATAGCTCATTTGG
* * *
270 AACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATTTTCGATTTGGCA
65 AAAACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATCTTCGATCTGGCA
** * *
335 AACCTTAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATGATCATTTTGGTGAGATTAGTC
130 AACCCCAATGCTTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTC
398 CACCGTGAAG
Statistics
Matches: 175, Mismatches: 16, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
204 13 0.07
205 150 0.86
206 12 0.07
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.41
Consensus pattern (204 bp):
GTTTATGCCCAAACTATAATCATTTTGGTGAGATAGTCCACTGTGAAGTTTATAGCTCATTTGGA
AAACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATCTTCGATCTGGCAA
ACCCCAATGCTTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCACT
ATTTCCATT
Found at i:511 original size:155 final size:153
Alignment explanation
Indices: 198--555 Score: 520
Period size: 155 Copynumber: 2.3 Consensus size: 153
188 TTAGTCACTA
* *
198 TTTCCATTGTTTATGCCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAGTTTATAGCT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACCGTGAGTTTATAGCT
*
263 TATTTGGAACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATTTTCGA
66 TATTTGGAACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATCTTCGA
* **
328 TTTGGCAAACCTTAATGCTTTTC
131 TCTGGCAAACCCCAATGCTTTTC
* *
351 TTTCCATTGTTTATGGCCTAACTATGATCATTTTGGTGAGATTAGTCCACCGTGAAGTTTTTAG-
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACCGTG-AGTTTATAGC
* * * * *
415 TTCATTTGGGACACTTGTTATTTTGGGCCTTTCGGGGGTCCATTAGTGACGTTTTGAATCGTCTT
65 TT-ATTTGGAACACTTGTTATTTTGGGCATATC-GGGGACCATTAGTGACGTTTTGAATCATCTT
* *
480 CGATCTGGCAACCCCCGATGCTTTTC
128 CGATCTGGCAAACCCCAATGCTTTTC
* * *
506 TTTCCATTGTTTATAGCCTAACTGTAATAATTTTGGTGAGATTAGTCCAC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCAC
556 TGTTTCCATT
Statistics
Matches: 183, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
153 53 0.29
154 35 0.19
155 95 0.52
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (153 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACCGTGAGTTTATAGCT
TATTTGGAACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATCTTCGA
TCTGGCAAACCCCAATGCTTTTC
Found at i:567 original size:52 final size:51
Alignment explanation
Indices: 506--609 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 51
496 GATGCTTTTC
* *
506 TTTCCATTGTTTATAGCCTAACTGTAATAATTTTGGTGAGATTAGTCCACTG
1 TTTCCATTGTTTATAGCCTAACTATAATAATTATGGT-AGATTAGTCCACTG
* * *
558 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTGATTAGTCCACTG
1 TTTCCATTGTTTATAGCCTAACTATAATAATTATGGTAGATTAGTCCACTG
609 T
1 T
610 GAAACTTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
51 14 0.30
52 33 0.70
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.43
Consensus pattern (51 bp):
TTTCCATTGTTTATAGCCTAACTATAATAATTATGGTAGATTAGTCCACTG
Found at i:744 original size:359 final size:358
Alignment explanation
Indices: 1--900 Score: 1385
Period size: 360 Copynumber: 2.5 Consensus size: 358
*
1 GTTTATGGCCAAACTATAATCATTTTGGTGAGA-TAGTCCACTGTGAAGTTTTTAGCTCATTTGG
1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
*
65 AAAACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCA
66 AACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCA
*
130 AACCCCGATGCTTTTATTTCCATTGTTTATGGCCTAACTATAATCATTTTAGGTGAGATTAGTCA
131 AACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTT-GGTGAGATTAGTCA
* *
195 CTATTTCCATTGTTTATGCCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAGTTTATA
195 CTATTTCCATTGTTTATGCCCTAACTATAATCATTATGGTGAGATTAGTCCACTGTGACTTTATA
* **
260 GCTTATTTGGAACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATTTT
260 GCTCATTTGGAACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATCAT
* *
325 CGATTTGGCAAACCTTAATGCTTTTCTTTCCATT
325 CGATTTGGCAAACCCTAATGCATTTCTTTCCATT
* * *
359 GTTTATGGCCTAACTATGATCATTTTGGTGAGATTAGTCCACCGTGAAGTTTTTAGTTCATTTGG
1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
* *
424 GACACTTGTTATTTTGGGCCTTTCGGGGGTCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGC
66 AACACTTGTTATTTTGGGCCTTTC-GGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGC
* * * *
489 AACCCCCGATGCTTTTCTTTCCATTGTTTATAGCCTAACTGTAATAATTTTGGTGAGATTAGTCC
130 AAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGT-C
* * *
554 ACTGTTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTT
194 ACTATTTCCATTGTTTATGCCCTAACTATAATCATTATGGTGAGATTAGTCCACTGTG--ACTTT
* * * * *
618 -TAGCTCATTTGGAACGCTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGT
257 ATAGCTCATTTGGAACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCAT
*
682 CATCGATTTGGCAACCCCT-ATGCATTTCTTTCCATT
322 CATCGATTTGGCAAACCCTAATGCATTTCTTTCCATT
*
718 GTTTATTGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
1 GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
* * * ** * *
783 AACACCTGTAATTTTGAGCCTACCGGGGCCCATTAGTGACGTTTTGAATCGTTTTCGATTTGGCA
66 AACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCA
* *
848 AACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
131 AACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
901 AAATTTAGTC
Statistics
Matches: 490, Mismatches: 47, Indels: 10
0.90 0.09 0.02
Matches are distributed among these distances:
358 116 0.24
359 173 0.35
360 197 0.40
361 4 0.01
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (358 bp):
GTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGG
AACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCA
AACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCAC
TATTTCCATTGTTTATGCCCTAACTATAATCATTATGGTGAGATTAGTCCACTGTGACTTTATAG
CTCATTTGGAACACTTGTTATTTTGGGCATATCGGGGACCATTAGTGACGTTTTGAATCATCATC
GATTTGGCAAACCCTAATGCATTTCTTTCCATT
Found at i:755 original size:204 final size:207
Alignment explanation
Indices: 351--762 Score: 650
Period size: 204 Copynumber: 2.0 Consensus size: 207
341 AATGCTTTTC
* * ** *
351 TTTCCATTGTTTATGGCCTAACTATGATCATTTTGGTGAGATTAGTCCACCGTGAAGTTTTTAGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTGAGATTAGTCCACCGTGAAACTTTTAGC
* * *
416 TCATTTGGGACACTTGTTATTTTGGGCCTTTCGGGGGTCCATTAGTGACGTTTTGAATCGTCTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGGCCCATTAGTGACGTTTTGAATCGTCATC
* *
481 GATCTGGCAACCCCCGATGCTTTTCTTTCCATTGTTTATAGCCTAACTGTAATAATTTTGGTGAG
131 GATCTGGCAACCCCCGATGCATTTCTTTCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAG
546 ATTAGTCCACTG
196 ATTAGTCCACTG
* *
558 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTGAGATTAGTCCACCGTGAAACTTTTAGC
*
622 TCATTTGGAACGCTTGTTATTTTGGGCCTTTC-GGGGCCCATTAGTGACGTTTTGAATCGTCATC
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGGCCCATTAGTGACGTTTTGAATCGTCATC
* * * *
686 GATTTGGCAA-CCCCTATGCATTTCTTTCCATTGTTTATTGCCTAACTATAATCATTTTGGTGAG
131 GATCTGGCAACCCCCGATGCATTTCTTTCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAG
750 ATTAGTCCACTG
196 ATTAGTCCACTG
762 T
1 T
763 GAAGTTTTTA
Statistics
Matches: 188, Mismatches: 17, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
204 62 0.33
205 39 0.21
206 52 0.28
207 35 0.19
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (207 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTGAGATTAGTCCACCGTGAAACTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGGCCCATTAGTGACGTTTTGAATCGTCATC
GATCTGGCAACCCCCGATGCATTTCTTTCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAG
ATTAGTCCACTG
Found at i:841 original size:153 final size:154
Alignment explanation
Indices: 558--1374 Score: 1162
Period size: 154 Copynumber: 5.3 Consensus size: 154
548 TAGTCCACTG
* * **
558 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
622 TCATTTGGAACGCTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCATCG
66 TCATTTGGAACACTTGTAATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
* * *
687 ATTTGGC-AACCCCTATGCATTTC
131 ATTTGGCAAACCTCAATGCTTTTC
*
710 TTTCCATTGTTTATTGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
775 TCATTTGGAACACCTGTAATTTTGAGCCTACCGGGGCCCATTAGTGACGTTTTGAATCGTTTTCG
66 TCATTTGGAACACTTGTAATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
840 ATTTGGCAAACCTCAATGCTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
* *
864 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-AAATTTAGTCTACTGTGAAG-TTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA-TTAGTCCACTGTGAAGTTTTTAG
* * * *
927 CTCATTTGGAACAATTGCT-ATTTTGGGCCTTTCGTGGCCCATTAGTGACGTTTTGAATCGTTTT
65 CTCATTTGGAACACTTG-TAATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTT
991 CGATTTGGCAAACCTCAATGCTTTTC
129 CGATTTGGCAAACCTCAATGCTTTTC
* * * * * *
1017 TTTCCATTGTTTATGGCCAAACTATGATAATTTTGCTGAGATTAGTACACTGTGAAGTTTTTACC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
** * * * *
1082 TCATTTGGAACACTTGTTAA-TTTGGGCCTATCAAGGTCCATCAGTTACGTTTTGAATCGACTTC
66 TCATTTGGAACACTTG-TAATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC
* *
1146 GATTTGGCGAACCTCGATGCTTTTC
130 GATTTGGCAAACCTCAATGCTTTTC
*
1171 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
1236 TAATTTGGAACACTTGTAATTTTGGGCCTAAT-GGGGACCATTAGTGTCGTTTTGAATTGTCTTC
66 TCATTTGGAACACTTGTAATTTTGGGCCT-ATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC
*
1300 GATTTGGTAAACCTCAATGCTTTTTC
130 GATTTGGCAAACCTCAATGC-TTTTC
1326 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1375 TTGTTTCCAT
Statistics
Matches: 591, Mismatches: 64, Indels: 17
0.88 0.10 0.03
Matches are distributed among these distances:
152 35 0.06
153 228 0.39
154 271 0.46
155 57 0.10
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTAATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
ATTTGGCAAACCTCAATGCTTTTC
Found at i:1170 original size:307 final size:305
Alignment explanation
Indices: 558--1371 Score: 1166
Period size: 307 Copynumber: 2.6 Consensus size: 305
548 TAGTCCACTG
* * *
558 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTGATTAGTCCACTGTGAAACTTTTAGCT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAGATTAGTCCACTGTG-AAGTTTTAGCT
* *
623 CATTTGGAACGCTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCATCGA
65 CATTTGGAACACTTG-TATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
* * * *
688 TTTGGC-AACCCCTATGCATTTCTTTCCATTGTTTATTGCCTAACTATAATCATTTTGGTGAGAT
129 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
* * ** *
752 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACCTGTAATTTTGAGCCTACCGGGGCCCATT
194 TAGTACACTGTGAAGTTTTTACCTCATTTGGAACACCTGTAATTTTGAGCCTACCAAGGCCCATC
**
817 AGTGACGTTTTGAATCGTTTTCGATTTGGCAAACCTCAATGCTTTTC
259 AGTGACGTTTTGAATCGACTTCGATTTGGCAAACCTCAATGCTTTTC
* *
864 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTTAGTCTACTGTGAAGTTTTAGCT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAGA-TTAGTCCACTGTGAAGTTTTAGCT
* * *
929 CATTTGGAACAATTGCTATTTTGGGCCTTTCGTGGCCCATTAGTGACGTTTTGAATCGTTTTCGA
65 CATTTGGAACACTTG-TATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
* * * *
994 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCAAACTATGATAATTTTGCTGAGAT
129 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
* * * *
1059 TAGTACACTGTGAAGTTTTTACCTCATTTGGAACACTTGTTAA-TTTGGGCCTATCAAGGTCCAT
194 TAGTACACTGTGAAGTTTTTACCTCATTTGGAACACCTG-TAATTTTGAGCCTACCAAGGCCCAT
* * *
1123 CAGTTACGTTTTGAATCGACTTCGATTTGGCGAACCTCGATGCTTTTC
258 CAGTGACGTTTTGAATCGACTTCGATTTGGCAAACCTCAATGCTTTTC
*
1171 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-AGATTAGTCCACTGTGAAG-TTTTAGC
* * * * *
1236 TAATTTGGAACACTTGTAATTTTGGGCCTAAT-GGGGACCATTAGTGTCGTTTTGAATTGTCTTC
64 TCATTTGGAACACTTGT-ATTTTGGGCCT-TTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC
*
1300 GATTTGGTAAACCTCAATGCTTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
127 GATTTGGCAAACCTCAATGC-TTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
1365 GATTAGT
191 GATTAGT
1372 CCATTGTTTC
Statistics
Matches: 451, Mismatches: 49, Indels: 13
0.88 0.10 0.03
Matches are distributed among these distances:
306 112 0.25
307 209 0.46
308 82 0.18
309 48 0.11
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (305 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAGATTAGTCCACTGTGAAGTTTTAGCTC
ATTTGGAACACTTGTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
GTACACTGTGAAGTTTTTACCTCATTTGGAACACCTGTAATTTTGAGCCTACCAAGGCCCATCAG
TGACGTTTTGAATCGACTTCGATTTGGCAAACCTCAATGCTTTTC
Found at i:1383 original size:52 final size:52
Alignment explanation
Indices: 1326--1426 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
1316 ATGCTTTTTC
1326 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTG
1378 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1427 CTGTGAAGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.44
Consensus pattern (52 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTG
Found at i:1527 original size:207 final size:206
Alignment explanation
Indices: 1171--1577 Score: 674
Period size: 207 Copynumber: 2.0 Consensus size: 206
1161 GATGCTTTTC
1171 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGT
* * * * * *
1236 TAATTTGGAACACTTGTAATTTTGGGCCTAATGGGGACCATTAGTGTCGTTTTGAATTGTCTTCG
66 CAATTCGGAACACTTGTAATTTCGGGCCTAATCGGGACCATTAGTGACGTTTTGAATCGTCTTCG
* * *
1301 ATTTGGTAAACCTCAATGCTTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
131 ATCTGGCAAACCCCAATGC-TTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
1366 ATTAGTCCATTG
195 ATTAGTCCATTG
1378 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAG-
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGT
*
1442 CACATTCGGAACACTTGTTATTTCGGGCCT-ATCGGGACACATTAGTGACGTTTTGAATCGTCTT
66 CA-ATTCGGAACACTTGTAATTTCGGGCCTAATCGGGAC-CATTAGTGACGTTTTGAATCGTCTT
*
1506 CGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTTA
129 CGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
1571 GATTAGT
194 GATTAGT
1578 ACACTATGAA
Statistics
Matches: 187, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
206 58 0.31
207 129 0.69
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (206 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGT
CAATTCGGAACACTTGTAATTTCGGGCCTAATCGGGACCATTAGTGACGTTTTGAATCGTCTTCG
ATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
TTAGTCCATTG
Found at i:1557 original size:361 final size:359
Alignment explanation
Indices: 1017--1733 Score: 1080
Period size: 361 Copynumber: 2.0 Consensus size: 359
1007 AATGCTTTTC
*
1017 TTTCCATTGTTTATGGCCAAACTATGATAATTTTGCTGAGATTAGTACACTGTGAAGTTTTTACC
1 TTTCCATTGTTTATGGCCAAACTATAATAATTTTGCTGAGATTAGTACACTGTGAAGTTTTTACC
* * * *
1082 TCATTTGGAACACTTGTTAATTTGGGCCTATCAAGGTCCATCAGTTACGTTTTGAATCGACTTCG
66 ACATTCGGAACACTTGTTAATTTGGGCCTATCAAGGACCATCAGTGACGTTTTGAATCGACTTCG
* * * *
1147 ATTTGGCGAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
131 ATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
* * * *
1212 TTAGTCCACTGTGAAGTTTTTAGTTAATTTGGAACACTTGTAATTTTGGGCCTAAT-GGGGACCA
196 TTAGTACACTATGAAGTTTTTAGCTAATTTGGAACACTTGTAATTTTGAG-C-AATCGGGGACCA
* * * * *
1276 TTAGTGTCGTTTTGAATTGTCTTCGATTTGGTAAACCTCAATGCTTTTTCTTTCCATTGTTTATG
259 TTAGTGACGTTTTGAATCGTCATCGATTTGGCAAACCTCAATGC-TTTTCTTTCCATTGTTTATA
*
1341 GCCTAACTATAATCATTTTGGTGAGATTAGTCCATTG
323 GCCTAACTATAATCATTTTGGTGAAATTAGTCCATTG
* * * * *
1378 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCAAACTATAATAATTTTGCTGAGATTAGTACACTGTGAAGTTTTTACC
* * *
1443 ACATTCGGAACACTTGTT-ATTTCGGGCCTATC-GGGACACATTAGTGACGTTTTGAATCGTCTT
66 ACATTCGGAACACTTGTTAATTT-GGGCCTATCAAGGAC-CATCAGTGACGTTTTGAATCGACTT
*
1506 CGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTTA
129 CGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
* * * *
1571 GATTAGTACACTATGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGAGCATTCGGGGCCCA
194 GATTAGTACACTATGAAGTTTTTAGCTAATTTGGAACACTTGTAATTTTGAGCAATCGGGGACCA
1636 TTAGTGACGTTTTGAATCGTCATCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAG
259 TTAGTGACGTTTTGAATCGTCATCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAG
1701 CCTAACTATAATCATTTTGGTGAAATTAGTCCA
324 CCTAACTATAATCATTTTGGTGAAATTAGTCCA
1734 CTGTGAAGTT
Statistics
Matches: 321, Mismatches: 32, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
359 54 0.17
360 55 0.17
361 212 0.66
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (359 bp):
TTTCCATTGTTTATGGCCAAACTATAATAATTTTGCTGAGATTAGTACACTGTGAAGTTTTTACC
ACATTCGGAACACTTGTTAATTTGGGCCTATCAAGGACCATCAGTGACGTTTTGAATCGACTTCG
ATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
TTAGTACACTATGAAGTTTTTAGCTAATTTGGAACACTTGTAATTTTGAGCAATCGGGGACCATT
AGTGACGTTTTGAATCGTCATCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAGCC
TAACTATAATCATTTTGGTGAAATTAGTCCATTG
Found at i:1706 original size:153 final size:154
Alignment explanation
Indices: 1378--1890 Score: 807
Period size: 153 Copynumber: 3.3 Consensus size: 154
1368 TAGTCCATTG
*
1378 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGC
* * * * * *
1443 ACATTCGGAACACTTGTTATTTCGGGCCTATCGGGACACATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCATCG
1508 ATCTGGCAAACCCCAATGCTTTTC
131 ATCTGGCAAACCCCAATGCTTTTC
* *
1532 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTTAGATTAGTACACTATGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGC
* *
1597 TCATTTGGAACACTTGTTATTTTGAGCAT-TCGGGGCCCATTAGTGACGTTTTGAATCGTCATCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCATCG
* *
1661 ATTTGGCAAACCTCAATGCTTTTC
131 ATCTGGCAAACCCCAATGCTTTTC
* * *
1685 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGC
* * * *
1750 TCATTTGGAACATTTGTTAATTTGGGCCTATCGGGGCCCATCAGT-ACGTTTTGAATCG-AATTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCA-TC
*
1813 GATCTGGCAAACCCCGATGCTTTTC
130 GATCTGGCAAACCCCAATGCTTTTC
1838 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTAT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTAT
1891 TTCCATTGTT
Statistics
Matches: 327, Mismatches: 30, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
152 1 0.00
153 226 0.69
154 100 0.31
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCATCG
ATCTGGCAAACCCCAATGCTTTTC
Found at i:1916 original size:52 final size:51
Alignment explanation
Indices: 1838--1939 Score: 186
Period size: 52 Copynumber: 2.0 Consensus size: 51
1828 GATGCTTTTC
1838 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGG-GAGATTAGTCCACTA
*
1890 TTTCCATTGTTTATGGCCTAACTATAATCGTTTTGGGAGATTAGTCCACT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGGAGATTAGTCCACT
1940 GTGAAGTTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 14 0.29
52 35 0.71
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.42
Consensus pattern (51 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGGAGATTAGTCCACTA
Found at i:2013 original size:358 final size:358
Alignment explanation
Indices: 1532--2607 Score: 1656
Period size: 358 Copynumber: 3.0 Consensus size: 358
1522 AATGCTTTTC
* * *
1532 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTTAGATTAGTACACTATGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGG-GAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
1597 TCATTTGGAACACTTGTTATTTTGAGCAT-TCGGGGCCCATTAGTGACGTTTTGAATCGTCATCG
65 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
1661 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAA
130 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAA
*
1726 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTAATTTGGGCCTATCGGGGCCCAT
195 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTAATTTGGGCCTATCGGGGCCCAT
* **
1791 CAGTACGTTTTGAATCGAATTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCC
260 TAGTACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCC
1856 TAACTATAATCATTTTGGTGAGATTAGTCCACTA
325 TAACTATAATCATTTTGGTGAGATTAGTCCACTA
* *
1890 TTTCCATTGTTTATGGCCTAACTATAATCGTTTTGGGAGATTAGTCCACTGTGAAGTTTTTTGCT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGGAGATTAGTCCACTGTGAAGTTTTTAGCT
* * *
1955 CATTTGGAATACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTTTTCGA
66 CATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
*
2020 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-AAAT
131 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAA-
* * * * *
2084 TTAGTCTACTGTAAAGTTTTTACCTCATTTGGAACAATTGTTATTTTGGGCCTTTCGGGGCCCAT
195 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTAATTTGGGCCTATCGGGGCCCAT
2149 TAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGC
260 TAGT-ACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGC
* * *
2214 CTAACTGTAATAATTTTGGTGAGATTAGTCCATTA
324 CTAACTATAATCATTTTGGTGAGATTAGTCCACTA
* * **
2249 TTTCCATTGTTTATGGCCTAACTATAATCATTAT-GGTGATTAGTCCACTGTGAAACTTTTAGCT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGGAGATTAGTCCACTGTGAAGTTTTTAGCT
* * * * *
2313 CATTTGAAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAATGACGTATTGAATCGACTTCGA
66 CATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
* * *
2378 TTTGGAAAACCTCAATGCTTTTCTTCCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGAT
131 TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAAT
* * * *
2443 TAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACACTTGTT-ATATTGGGCCTATCGGGACACAT
196 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTAAT-TTGGGCCTATCGGGGCCCAT
* * * * * *
2507 TAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCGTTTCTTTCCATTGTTTATAGC
260 TAG-TACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGC
*
2572 CCAACTATAATCATTTTGGTGAGATTAGTCCACTA
324 CTAACTATAATCATTTTGGTGAGATTAGTCCACTA
2607 T
1 T
2608 GAACTTTTTA
Statistics
Matches: 651, Mismatches: 61, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
357 54 0.08
358 472 0.73
359 125 0.19
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.40
Consensus pattern (358 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGGAGATTAGTCCACTGTGAAGTTTTTAGCT
CATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
TTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAAT
TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTAATTTGGGCCTATCGGGGCCCATT
AGTACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCT
AACTATAATCATTTTGGTGAGATTAGTCCACTA
Found at i:2040 original size:205 final size:205
Alignment explanation
Indices: 1685--2079 Score: 648
Period size: 205 Copynumber: 1.9 Consensus size: 205
1675 AATGCTTTTC
1685 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGC
* *
1750 TCATTTGGAACATTTGTTAATTTGGGCCTATCGGGGCCCATCAGTACGTTTTGAATCGAATTCGA
66 TCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGACCATCAGTACGTTTTGAATCGAATTCGA
*
1815 TCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
131 TCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
1880 TAGTCCACTA
196 TAGTCCACTA
* * * *
1890 TTTCCATTGTTTATGGCCTAACTATAATCGTTTTGG-GAGATTAGTCCACTGTGAAGTTTTTTGC
1 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGC
* * * **
1954 TCATTTGGAATACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTTTTCG
66 TCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGACCATCAGT-ACGTTTTGAATCGAATTCG
* *
2019 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
130 ATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT
2080 AAATTTAGTC
Statistics
Matches: 175, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
204 66 0.38
205 109 0.62
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.41
Consensus pattern (205 bp):
TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGACCATCAGTACGTTTTGAATCGAATTCGA
TCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
TAGTCCACTA
Found at i:2173 original size:154 final size:153
Alignment explanation
Indices: 1890--2245 Score: 532
Period size: 154 Copynumber: 2.3 Consensus size: 153
1880 TAGTCCACTA
* * * * **
1890 TTTCCATTGTTTATGGCCTAACTATAATCGTTTTGGGAGATTAGTCCACTGTGAAGTTTTTTGCT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTAGTCCACTGTAAAGTTTTTACCT
* * *
1955 CATTTGGAATACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTTTTCGA
66 CATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGA
* *
2020 TTTGGCAAACCTCAATGCTTTTC
131 TCTGGCAAACCCCAATGCTTTTC
*
2043 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTTAGTCTACTGTAAAGTTTTTACC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAA-TTAGTCCACTGTAAAGTTTTTACC
* *
2108 TCATTTGGAACAATTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
65 TCATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
*
2173 ATCTGGCAAACCCCGATGCTTTTC
130 ATCTGGCAAACCCCAATGCTTTTC
* * *
2197 TTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGATTAGTCCA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-AAATTAGTCCA
2246 TTATTTCCAT
Statistics
Matches: 182, Mismatches: 19, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
153 37 0.20
154 143 0.79
155 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (153 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTAGTCCACTGTAAAGTTTTTACCT
CATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGA
TCTGGCAAACCCCAATGCTTTTC
Found at i:2286 original size:52 final size:50
Alignment explanation
Indices: 2197--2295 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 50
2187 GATGCTTTTC
* *
2197 TTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGATTAGTCCATTA
1 TTTCCATTGTTTATGGCCTAACTATAATAATTATGGT--GATTAGTCCATTA
*
2249 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTGATTAGTCCA
1 TTTCCATTGTTTATGGCCTAACTATAATAATTATGGTGATTAGTCCA
2296 CTGTGAAACT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 10 0.23
52 34 0.77
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (50 bp):
TTTCCATTGTTTATGGCCTAACTATAATAATTATGGTGATTAGTCCATTA
Found at i:2398 original size:204 final size:206
Alignment explanation
Indices: 2043--2449 Score: 604
Period size: 204 Copynumber: 2.0 Consensus size: 206
2033 AATGCTTTTC
* * *
2043 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTTAGTCTACTGTAAAGTTTTTACC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTAAAGCTTTTACC
* * * * * *
2108 TCATTTGGAACAATTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGAAACAATTGTTATTTTGGGCCTATCGAGGCCCATTAATGACGTATTGAATCGACTTCG
* * * * *
2173 ATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGA
131 ATCTGGAAAACCCCAATGCTTTTCTTCCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAGA
2238 TTAGTCCATTA
196 TTAGTCCATTA
* *
2249 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-GA-TTAGTCCACTGTGAAA-CTTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGT-AAAGCTTTTAC
*
2311 CTCATTTGAAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAATGACGTATTGAATCGACTTC
65 CTCATTTGAAACAATTGTTATTTTGGGCCTATCGAGGCCCATTAATGACGTATTGAATCGACTTC
* * *
2376 GATTTGGAAAACCTCAATGCTTTTCTTCCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAG
130 GATCTGGAAAACCCCAATGCTTTTCTTCCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAG
2441 ATTAGTCCA
195 ATTAGTCCA
2450 CTGTGAAGTT
Statistics
Matches: 180, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
204 140 0.78
205 4 0.02
206 36 0.20
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (206 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTAAAGCTTTTACC
TCATTTGAAACAATTGTTATTTTGGGCCTATCGAGGCCCATTAATGACGTATTGAATCGACTTCG
ATCTGGAAAACCCCAATGCTTTTCTTCCCATTGTTTATAGCCTAACTATAATAATTTTGGTGAGA
TTAGTCCATTA
Found at i:2530 original size:154 final size:153
Alignment explanation
Indices: 2249--3065 Score: 1163
Period size: 154 Copynumber: 5.3 Consensus size: 153
2239 TAGTCCATTA
* **
2249 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT--GATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
2312 TCATTTGAAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAATGACGTATTGAATCGACTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCG-GGCCCATTAGTGACGTTTTGAATCGTCTTCG
*
2377 ATTTGGAAAACCTCAATGCTTTTC
130 ATTTGGCAAACCTCAATGCTTTTC
* *
2401 TTCCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * **
2466 TCATTCGGAACACTTGTTATATTGGGCCTATCGGGACACATTAGTTCCGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGG-CCCATTAGTGACGTTTTGAATCGTCTTCG
*
2531 ATTTGGCAAACCTCAATGCGTTTC
130 ATTTGGCAAACCTCAATGCTTTTC
* * * *
2555 TTTCCATTGTTTATAGCCCAACTATAATCATTTTGGTGAGATTAGTCCACTATGAACTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * *
2620 TAATTTGGAACACTTGTTATTTTGAGCCGATCGGGCCCATTAGTGACGTATTGAATCTTCTTCGA
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
* * *
2685 ATTGGCAAGCCTCAATG-TTTTG
131 TTTGGCAAACCTCAATGCTTTTC
* * * *
2707 TTTCCATTGTTTATGGCCTACCTATAATCATTTTGTTTAGATTAGTCCACTTTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
2772 TCATTTCGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTCAATCGTCATCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGCCCATTAGTGACGTTTTGAATCGTCTTCG
*
2837 ATTTGGCAACCCTCAATGCTTTTC
130 ATTTGGCAAACCTCAATGCTTTTC
*
2861 TTTCCATTGTTTATGGTCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
2926 TCATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGCCCATTAGTGACGTTTTGAATCGTCTTCG
* * * *
2991 ATCTAGCAAACCCCGATGCTTTTC
130 ATTTGGCAAACCTCAATGCTTTTC
* *
3015 TTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGATTAGTCCACT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
3066 ATTTCCATTG
Statistics
Matches: 588, Mismatches: 72, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
152 122 0.21
153 86 0.15
154 380 0.65
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (153 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
TTTGGCAAACCTCAATGCTTTTC
Found at i:2802 original size:306 final size:307
Alignment explanation
Indices: 2249--4354 Score: 1679
Period size: 308 Copynumber: 6.7 Consensus size: 307
2239 TAGTCCATTA
*
2249 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT--GATTAGTCCACTGTGAAAC-TTTTAG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTG-AACTTTTTAG
* * *
2311 CTCATTTGAAACACTTGTTATTTTGGGCCTATCGAGGCCCATTAATGACGTATTGAATCGACTTC
65 CTCATTTGGAACACTTGTTATTTTGGGCCTATCG-GGCCCATTAGTGACGTATTGAATCGTCTTC
* * * *
2376 GATTTGGAAAACCTCAATGCTTTTCTTCCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAG
129 GAATTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
2441 ATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACACTTGTTATATTGGGCCTATCGGGACACA
194 ATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACACTTGTTATATTGGGCCTATCGGGACACA
** * *
2506 TTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCGTTTC
259 TTAGTGACGTTTTCAATCGTCATCGATTTGGCAAACCTCAATGCGTTTC
* * *
2555 TTTCCATTGTTTATAGCCCAACTATAATCATTTTGGTGAGATTAGTCCACTATGAACTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAACTTTTTAGC
* * * *
2620 TAATTTGGAACACTTGTTATTTTGAGCCGATCGGGCCCATTAGTGACGTATTGAATCTTCTTCGA
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGCCCATTAGTGACGTATTGAATCGTCTTCGA
* * * * *
2685 ATTGGCAAGCCTCAATG-TTTTGTTTCCATTGTTTATGGCCTACCTATAATCATTTTGTTTAGAT
131 ATTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
* * * * *
2749 TAGTCCACTTTGAAGTTTTTAGCTCATTTC-GAACACTTTTTATTTTGGGCCTATCGGGGCCCAT
196 TAGTCCACTGTGAAGTTTTTAGCTCA-TTCGGAACACTTGTTATATTGGGCCTATCGGGACACAT
* *
2813 TAGTGACGTTTTCAATCGTCATCGATTTGGCAACCCTCAATGCTTTTC
260 TAGTGACGTTTTCAATCGTCATCGATTTGGCAAACCTCAATGCGTTTC
* *
2861 TTTCCATTGTTTATGGTCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAACTTTTTAGC
* * *
2926 TCATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGCCCATTAGTGACGTATTGAATCGTCTTCG
* * * * *
2991 -ATCTAGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAG
130 AAT-TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
* ** * * ** * * * *
3055 ATTAGTCCACTATTTCCA-TTGTTTATGGCCTAACT-ATAATCATTATGGTT-GATTAGTCC-A-
194 ATTAGTCCAC--TGTGAAGTT-TTTA--G-CTCATTCGGAA-CACT-T-GTTATATTGGGCCTAT
* * * * ** * * * * *
3115 CTGTGAAACTTTTAGCT--CATTTGGAA-C-AC-TTGTTATTTTGGGCCTATCGGGGCCCATTAG
250 C-GGGACAC-ATTAG-TGACGTTTTCAATCGTCATCG--A-TTT-GG-CAAAC----CTCA--A-
3175 TGTCG-TTC
300 TG-CGTTTC
* * * * ** *** * * *
3183 TGAATCGTC-TTCGATTTA-GAAACCTAAATGCTTTTC-TTTCCAT-TGTTTATGTCCTACCTAT
1 T--TTC--CATT-G-TTTATG--GCCTAACT-ATAATCATTTTGGTGAGATTA-GTCC-A-CTGT
* * * * * *
3244 -AATCATTTTGGTGAGATTAGTCCACTGTG-A-AGTTTTTAGGTCATTTGGAACACTTGTTATTT
54 GAA-C-TTTT--T-AGCTCA-T---TTG-GAACACTTGTTA--T--TTTGG-GC-C----TA--T
* * * * * * ** * * **
3306 TGTGCCTA-TCGGGGCCCACTT-AGTCGTCGTTATGAATCGTCTTCGATTTGGTAACCTCAATGT
97 CGGGCCCATTAGTGACGTA-TTGAATCGTC-TT-CGAA-----TT-G----GCAAACCTCAATG-
* * *
3369 CTTTTCTTTCCATTGTTTATGGCCTTACTA-AATCATTTTGGTGAGATTAGTCTACTATGAAGTT
148 CTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTT
* * * * * ** *
3433 TTTAGCTCATTTGGAACACTTGTTAT-TCTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATC
213 TTTAGCTCATTCGGAACACTTGTTATAT-TGGGCCTATCGGGACACATTAGTGACGTTTTCAATC
* * * *
3497 GTCTTCGATTTGGCAACCCTCGATGCTTTTC
277 GTCATCGATTTGGCAAACCTCAATGCGTTTC
* * *
3528 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCGACTGTG-ATTGTTTTAA
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAACT-TTTT-A
* * * ** * *
3592 GCTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCATTAGTTCCGTTTTGAATCGTATTC
64 GCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGCCCATTAGTGACGTATTGAATCGTCTTC
* * * * *
3657 GATTTGGCAACCCTCGATGCTTTTGTTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAG
129 GAATTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
* ** * *
3722 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTTGGAACACTTGTTA-ATTTTAGCCTTTCGGGGCC
194 ATTAGTCCACTGTGAAGTTTTTAGCTCA-TTCGGAACACTTGTTATA-TTGGGCCTATC-GGGAC
* * ** *
3786 CCACTTAGTGACGTTTTTGAATCGTTTTCGATTTGGCAAACCTTCAATGCTTTTC
256 ACA-TTAGTGACG-TTTTCAATCGTCATCGATTTGGCAAACC-TCAATGCGTTTC
* * *
3841 TTTCCATTGTTTATGGCCTAACTATAATTCATTTTGGT-AAATTTAGTCTACTGTGAAGTTTTTA
1 TTTCCATTGTTTATGGCCTAACTATAA-TCATTTTGGTGAGA-TTAGTCCACTGTGAACTTTTTA
* * * * *
3905 GCTCATTTGGAACAATTGTTACTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTTTT
64 GCTCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGCCCATTAGTGACGTATTGAATCGTCTT
* * * *
3970 CGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGA
128 CGAATTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGA
* *
4035 GATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTA-ATTTGGGCCTATCGGGGTC
193 GATTAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACACTTGTTATA-TTGGGCCTATC-GGGAC
* * * * * * * *
4099 -CATCAGTTACGTTTTGAATCGACTTCGATTTGGCGAACCTCGATGCTTTTC
256 ACATTAGTGACGTTTTCAATCGTCATCGATTTGGCAAACCTCAATGCGTTTC
*
4150 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAACTTTTTAGC
* * *
4215 TCATTTGGAAAACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATC-GGGCCCATTAGTGACGTATTGAATCGTCTTCG
* *
4280 -ATCTGGTAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
130 AAT-TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
4344 ATTAGTCCACT
194 ATTAGTCCACT
4355 ATTTTCATTG
Statistics
Matches: 1444, Mismatches: 238, Indels: 234
0.75 0.12 0.12
Matches are distributed among these distances:
306 262 0.18
307 118 0.08
308 309 0.21
309 66 0.05
310 43 0.03
311 15 0.01
312 36 0.02
313 124 0.09
314 152 0.11
315 8 0.01
318 2 0.00
319 12 0.01
320 8 0.01
321 2 0.00
322 6 0.00
323 1 0.00
324 2 0.00
325 3 0.00
326 4 0.00
327 12 0.01
328 13 0.01
329 8 0.01
330 6 0.00
331 10 0.01
333 2 0.00
334 9 0.01
335 2 0.00
336 3 0.00
337 10 0.01
338 6 0.00
339 15 0.01
340 8 0.01
341 8 0.01
342 3 0.00
343 3 0.00
344 1 0.00
345 6 0.00
346 1 0.00
347 12 0.01
348 10 0.01
349 2 0.00
350 1 0.00
352 8 0.01
353 12 0.01
354 21 0.01
355 7 0.00
356 1 0.00
357 9 0.01
358 2 0.00
359 32 0.02
360 28 0.02
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (307 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAACTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGCCCATTAGTGACGTATTGAATCGTCTTCGA
ATTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
TAGTCCACTGTGAAGTTTTTAGCTCATTCGGAACACTTGTTATATTGGGCCTATCGGGACACATT
AGTGACGTTTTCAATCGTCATCGATTTGGCAAACCTCAATGCGTTTC
Found at i:3292 original size:358 final size:361
Alignment explanation
Indices: 2707--3426 Score: 1092
Period size: 359 Copynumber: 2.0 Consensus size: 361
2697 CAATGTTTTG
* * * * **
2707 TTTCCATTGTTTATGGCCTACCTATAATCATTTTGTTTAGATTAGTCCACTTTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTAGATTAGTCCACTGTGAAACTTTTAGC
* *
2772 TCATTTCGAACACTTTTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTCAATCGTCATCG
66 TCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTCTCAATCGTCATCG
* * *
2837 ATTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGTCTAACTATAATCATTTTGGTGAGA
131 ATTTAGCAAACCTAAATGCTTTTCTTTCCATTGTTTATGGTCTAACTATAATCATTTTGGTGAGA
2902 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCA-
196 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCAC
* *
2966 TTAGT-GACGTTTTGAATCGTCTTCGATCTAGCAAACCCCGATG-CTTTTCTTTCCATTGTTTAT
261 TTAGTCGACGTTATGAATCGTCTTCGAT-TAGCAAACCCCAATGTCTTTTCTTTCCATTGTTTAT
*
3029 GGCCTAACTGTAATAATTTTGGTGAGATTAGTCCACTA
325 GGCCTAACT-AAATAATTTTGGTGAGATTAGTCCACTA
3067 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTT-GATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTAGATTAGTCCACTGTGAAACTTTTAGC
* * * *
3131 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGTCGTTCTGAATCGTCTTCG
66 TCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTCTCAATCGTCATCG
*
3196 ATTTAG-AAACCTAAATGCTTTTCTTTCCATTGTTTAT-GTCCTACCTATAATCATTTTGGTGAG
131 ATTTAGCAAACCTAAATGCTTTTCTTTCCATTGTTTATGGT-CTAACTATAATCATTTTGGTGAG
* * * *
3259 ATTAGTCCACTGTGAAGTTTTTAGGTCATTTGGAACACTTGTTATTTTGTGCCTATCGGGGCCCA
195 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCA
* * ** *
3324 CTTAGTCGTCGTTATGAATCGTCTTCGATTTGGTAACCTCAATGTCTTTTCTTTCCATTGTTTAT
260 CTTAGTCGACGTTATGAATCGTCTTCGATTAGCAAACCCCAATGTCTTTTCTTTCCATTGTTTAT
* * *
3389 GGCCTTACTAAATCATTTTGGTGAGATTAGTCTACTA
325 GGCCTAACTAAATAATTTTGGTGAGATTAGTCCACTA
3426 T
1 T
3427 GAAGTTTTTA
Statistics
Matches: 325, Mismatches: 31, Indels: 9
0.89 0.08 0.02
Matches are distributed among these distances:
357 2 0.01
358 112 0.34
359 128 0.39
360 83 0.26
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (361 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTAGATTAGTCCACTGTGAAACTTTTAGC
TCATTTCGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTCTCAATCGTCATCG
ATTTAGCAAACCTAAATGCTTTTCTTTCCATTGTTTATGGTCTAACTATAATCATTTTGGTGAGA
TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTATTTTGGGCCTATCGGGGACCAC
TTAGTCGACGTTATGAATCGTCTTCGATTAGCAAACCCCAATGTCTTTTCTTTCCATTGTTTATG
GCCTAACTAAATAATTTTGGTGAGATTAGTCCACTA
Found at i:3651 original size:154 final size:154
Alignment explanation
Indices: 3067--4354 Score: 1842
Period size: 154 Copynumber: 8.3 Consensus size: 154
3057 TAGTCCACTA
* * **
3067 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
3131 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGT-CGTTCTGAATCGTCTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGT-TACGTTTTGAATCGTCTTC
* * *
3195 GATTTAG-AAACCTAAATGCTTTTC
130 GATTTGGCAACCCTCAATGCTTTTC
* * *
3219 TTTCCATTGTTTATGTCCTACCTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
3284 TCATTTGGAACACTTGTTATTTTGTGCCTATCGGGGCCCACTTAGTCGT-CGTTATGAATCGTCT
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCA-TTAGT--TACGTTTTGAATCGTCT
*
3348 TCGATTTGGTAA-CCTCAATGTCTTTTC
128 TCGATTTGGCAACCCTCAATG-CTTTTC
* * *
3375 TTTCCATTGTTTATGGCCTTACTA-AATCATTTTGGTGAGATTAGTCTACTATGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
3439 TCATTTGGAACACTTGTTATTCTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCG
*
3504 ATTTGGCAACCCTCGATGCTTTTC
131 ATTTGGCAACCCTCAATGCTTTTC
* * * *
3528 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCGACTGTGATTGTTTTAAG
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGA-AGTTTTTAG
* * *
3593 CTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGGG-CCATTAGTTCCGTTTTGAATCGTATTC
65 CTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACGTTTTGAATCGTCTTC
* *
3657 GATTTGGCAACCCTCGATGCTTTTG
130 GATTTGGCAACCCTCAATGCTTTTC
*
3682 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
3747 TCATTTTGGAACACTTGTTAATTTT-AGCCTTTCGGGGCCCCACTTAGTGACGTTTTTGAATCGT
66 TCA-TTTGGAACACTTGTT-ATTTTGGGCCTTTCGGGG-CCCA-TTAGTTACG-TTTTGAATCGT
* *
3811 TTTCGATTTGGCAAACCTTCAATGCTTTTC
126 CTTCGATTTGGC-AACCCTCAATGCTTTTC
* *
3841 TTTCCATTGTTTATGGCCTAACTATAATTCATTTTGGT-AAATTTAGTCTACTGTGAAGTTTTTA
1 TTTCCATTGTTTATGGCCTAACTATAA-TCATTTTGGTGAGA-TTAGTCCACTGTGAAGTTTTTA
* * * *
3905 GCTCATTTGGAACAATTGTTACTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTTTT
64 GCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACGTTTTGAATCGTCTT
*
3970 CGATTTGGCAAACCTCAATGCTTTTC
129 CGATTTGGCAACCCTCAATGCTTTTC
* * *
3996 TTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * *
4061 TCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGTCCATCAGTTACGTTTTGAATCGACTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCG
*
4126 ATTTGGCGAA-CCTCGATGCTTTTC
131 ATTTGGC-AACCCTCAATGCTTTTC
4150 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
4215 TCATTTGGAAAACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCG
* *
4280 ATCTGGTAAACCC-CAATGCTTTTC
131 ATTTGG-CAACCCTCAATGCTTTTC
4304 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
4355 ATTTTCATTG
Statistics
Matches: 1035, Mismatches: 78, Indels: 44
0.89 0.07 0.04
Matches are distributed among these distances:
152 35 0.03
153 127 0.12
154 470 0.45
155 199 0.19
156 55 0.05
157 16 0.02
158 30 0.03
159 68 0.07
160 35 0.03
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTACGTTTTGAATCGTCTTCG
ATTTGGCAACCCTCAATGCTTTTC
Found at i:4365 original size:52 final size:52
Alignment explanation
Indices: 4308--4406 Score: 180
Period size: 52 Copynumber: 1.9 Consensus size: 52
4298 CTTTTCTTTC
4308 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATTTT
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATTTT
**
4360 CATTGTTTATGGCCTAACTATAATTGTTTTGGTGAGATTAGTCCACT
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
4407 GTGAAGTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.43
Consensus pattern (52 bp):
CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTATTTT
Found at i:4508 original size:206 final size:206
Alignment explanation
Indices: 4154--4560 Score: 699
Period size: 206 Copynumber: 2.0 Consensus size: 206
4144 CTTTTCTTTC
4154 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
* *
4219 TTGGAAAACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCT
66 TTGGAAAACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATCT
* *
4284 GGTAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA-TTA
131 GGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-AAATTTA
4348 GTCCACTATTTT
195 GTCCACTATTTT
**
4360 CATTGTTTATGGCCTAACTATAATTGTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
* * * *
4425 TTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGATGTTTTGAATCGTTTTCGATTT
66 TTGGAAAACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATCT
*
4490 GGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTTAG
131 GGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTTAG
4555 TCCACT
196 TCCACT
4561 GTGAAGTTTT
Statistics
Matches: 189, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
205 2 0.01
206 187 0.99
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (206 bp):
CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
TTGGAAAACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATCT
GGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTTAG
TCCACTATTTT
Found at i:4640 original size:154 final size:154
Alignment explanation
Indices: 4360--4716 Score: 572
Period size: 154 Copynumber: 2.3 Consensus size: 154
4350 CCACTATTTT
**
4360 CATTGTTTATGGCCTAACTATAATTGTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
1 CATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
* * *
4425 TTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGATGTTTTGAATCGTTTTCGATTT
66 TTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATCT
*
4490 GGCAAACCTCAATGCTTTTCTTTC
131 GGCAAACCCCAATGCTTTTCTTTC
* * *
4514 CATTGTTTATGGCCTAACTATAATCATTTTGGT-AAATTTAGTCCACTGTGAAGTTTTTAGTTCA
1 CATTGTTTATGGCCTAACTATAATAATTTTGGTGAGA-TTAGTCCACTGTGAAGTTTTTAGCTCA
* * *
4578 TTTGGAACACTTGTTATTTTGGTCCTTTCGGGGTCCATTAGTGACGTTTTGAATCGTCTTCGATC
65 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATC
*
4643 TGGCAAACCCCGATGCTTTTCTTTC
130 TGGCAAACCCCAATGCTTTTCTTTC
*
4668 CATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGATTAGTCCACTGT
1 CATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGT
4717 TTCCATTGTT
Statistics
Matches: 186, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
153 2 0.01
154 182 0.98
155 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (154 bp):
CATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCAT
TTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATCT
GGCAAACCCCAATGCTTTTCTTTC
Found at i:4661 original size:360 final size:359
Alignment explanation
Indices: 3996--6201 Score: 1791
Period size: 360 Copynumber: 6.0 Consensus size: 359
3986 AATGCTTTTC
* *
3996 TTTCCATTGTTTATGGCCTAACTATGATAATTTTGCTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * *
4061 TCATTTGGAACACTTGTTAATTTGGGCCTATCGGGGTCCATCAGTTACGTTTTGAATCG-ACTTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTA-TTC
*
4125 GATTTGGCGAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
130 GATTTGGCAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
* *
4190 ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAAAACTTGTTATTTTGGGCCTTTCGGGGCCCA
195 ATTAGTCCACTGTGAAGTTTTTAGTTCATTTGGAACACTTGTTATTTT-GGCCTTTCGGGGCCCA
*
4255 TTAGTGACGTTTTGAATCGTCTTCGATCTGGTAAACCCCAATGCTTTTCTTTCCATTGTTTATGG
259 TTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGG
4320 CCTAACTATAATCATTTTGGTGAGATTAGTCCACTA
324 CCTAACTATAATCATTTTGGTGAGATTAGTCCACTA
* **
4356 TTTTCATTGTTTATGGCCTAACTATAATTGTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
4421 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGATGTTTTGAATCGTTTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTATTCG
* *
4486 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGT-AAA
131 ATTTGGCAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
*
4550 TTTAGTCCACTGTGAAGTTTTTAGTTCATTTGGAACACTTGTTATTTTGGTCCTTTCGGGGTCCA
196 -TTAGTCCACTGTGAAGTTTTTAGTTCATTTGGAACACTTGTTATTTTGG-CCTTTCGGGGCCCA
*
4615 TTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGG
259 TTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGG
* * *
4680 CCTAACTGTAATAATTTTGGTGAGATTAGTCCACTG
324 CCTAACTATAATCATTTTGGTGAGATTAGTCCACTA
* * * **
4716 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * ** * *
4780 TCATTTGGAACACTTG-TATTTTGGGCGTTTCTAGGCCCATTAGTGACGTTTTGAAACGTCATTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGT-ATTC
* *
4844 GATTTGGCAATCCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
130 GATTTGGCAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
* *
4909 ATTAGTCCACTGTGAAGTTTTTA-TCTCATTTGGAACACTTGTAATTTTGAGCCTATCGGGGCCC
195 ATTAGTCCACTGTGAAGTTTTTAGT-TCATTTGGAACACTTGTTATTTTG-GCCTTTCGGGGCCC
* * * * *
4973 ATTAGTGTCGTTTTGAATCGTCTTCGATTTGGGAAACCTCTATGCTTTTCTTTCCATTGTTTATG
258 ATTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATG
*
5038 GCCAAACTATAATCATTTTGGTGAGATTAGTCCACTA
323 GCCTAACTATAATCATTTTGGTGAGATTAGTCCACTA
* * * ** * *** * * *
5075 ---CGA-AGTTTATAGCTCATTGGAAC-ACTTGTTATTTTGG-GCCTTTCGGGGCCCATTAGTGA
1 TTTCCATTGTTTATGGC-C--T--AACTA-TAATAATTTTGGTGAGATT---AGTCCACT-GTGA
* * * ** * ***
5134 CGTTTTGAATCGACTTCGATTTGGAAAACCTCAATGGTT-TTCTT-TTCCTAT---TGTTTATTA
56 AGTTTT---TAG-C-TC-ATTTGGAACA-CT---T-GTTATT-TTGGGCCTATCGGGGACCATTA
* * * * * * * * * * **
5194 GCCTAAC--TAT-AATCATTTTGGTGAGATTAGTC-CA-CTGTGAAG-TTTT-TAGCTCATTTGG
109 G--TGACGTTTTGAATC-GTAT--T-CGATTTGGCAAACCT-CGATGCTTTTCTTTC-CA-TT-G
*** * * * * * * ** * ** * ** *
5252 AACACTTG--TAA-TATTGA-CCTATCGGGGCCCATTAGTGTCGTTTTGAA--TCGT-CTTCGAT
164 TTTA-TGGCCTAACTA-TAATCATTTTGGTG-AGATTAGT-CCACTGTGAAGTTTTTAGTTC-AT
* *** * ** * ** *
5310 TTGGCAA-ACCTCAATGCTT-TTCTT-TCCATTGTTTATGGCCAAACCA-TAATCAATTTG-GTC
224 TTGG-AACA-CT---TG-TTATT-TTGGCC--T-TTCGGGGCC-CATTAGTGA-CGTTTTGAATC
* * **** * ****** *
5370 AGAT-TAGTCCA-CT-GCGAA-CTTTTTAGCTCATTGGGAAAACTTGTTATTTTGGACCTATCAG
277 -G-TCT--TCGATCTGGCAAACCCCAAT-GCT-TTTCTTTCCA-TTG-T-TTATGG-CCTA--A-
* * * * * * * *
5431 GGCCCATTAGTGACGTTTTGAATCGACTTCGATTTGGAAAACCTCAATGGTTTTC
329 ---CTA-TAAT--CATTTTG-GT-GA----GA-TT-----A-GTCCA-----CTA
* * *
5486 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTATTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * ** *
5551 TCATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTTCCGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTATTCG
*
5616 ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
131 ATTTGGCAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
* *
5681 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCCTTCGGGGCCCAT
196 TTAGTCCACTGTGAAGTTTTTAGTTCATTTGGAACACTTGTTATTTT-GGCCTTTCGGGGCCCAT
*
5746 TAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGC
260 TAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGC
* *
5811 CTAACTGTAATAATTTTGGTGAGATTAGTCCACTTA
325 CTAACTATAATCATTTTGGTGAGATTAGTCCAC-TA
* * * **
5847 TTTACATTGTTTATGGCCTAACTATAATCATTATGGTG-GATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
5911 TCATTTGGAACACTTGTTATTTTGGGCCAATC-GGGACCATTACTGACG-TTTGAATCG-ATTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTATTCG
* * *
5973 ATTTGGAAAACCTCAATGC-TTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGA
131 ATTTGGCAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
* * * *
6037 TTAGTCCACTGTAAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGAACCTATCGGGGACCA
196 TTAGTCCACTGTGAAGTTTTTAGTTCATTTGGAACACTTGTTATTTTGG--CCTTTCGGGGCCCA
* * * * *
6102 TTAGTGTCGTTTTGAATCGTCTTCGATTTGGGAAAGCTCAATGCTTTTCTTTCCATTGTTTATGG
259 TTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGG
6167 CCTAACTATAATCATTTTGGTGAGATTAGTCCACT
324 CCTAACTATAATCATTTTGGTGAGATTAGTCCACT
6202 GTGAAGTTTT
Statistics
Matches: 1446, Mismatches: 266, Indels: 272
0.73 0.13 0.14
Matches are distributed among these distances:
355 10 0.01
356 94 0.07
357 124 0.09
358 47 0.03
359 269 0.19
360 432 0.30
361 36 0.02
363 5 0.00
364 7 0.00
365 3 0.00
366 1 0.00
367 2 0.00
368 1 0.00
369 2 0.00
370 9 0.01
371 12 0.01
372 36 0.02
373 21 0.01
374 18 0.01
375 10 0.01
376 9 0.01
377 5 0.00
378 17 0.01
379 15 0.01
380 8 0.01
381 7 0.00
382 1 0.00
383 5 0.00
384 3 0.00
385 1 0.00
386 1 0.00
387 4 0.00
388 5 0.00
389 1 0.00
390 8 0.01
391 9 0.01
392 16 0.01
393 18 0.01
394 5 0.00
395 6 0.00
396 9 0.01
397 21 0.01
398 23 0.02
399 27 0.02
400 18 0.01
401 13 0.01
402 2 0.00
403 1 0.00
404 2 0.00
405 1 0.00
406 3 0.00
407 9 0.01
408 4 0.00
410 12 0.01
411 5 0.00
412 1 0.00
414 3 0.00
415 9 0.01
ACGTcount: A:0.22, C:0.18, G:0.19, T:0.40
Consensus pattern (359 bp):
TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGACGTTTTGAATCGTATTCG
ATTTGGCAAACCTCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
TTAGTCCACTGTGAAGTTTTTAGTTCATTTGGAACACTTGTTATTTTGGCCTTTCGGGGCCCATT
AGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCAATGCTTTTCTTTCCATTGTTTATGGCC
TAACTATAATCATTTTGGTGAGATTAGTCCACTA
Found at i:4725 original size:52 final size:51
Alignment explanation
Indices: 4664--4767 Score: 163
Period size: 52 Copynumber: 2.0 Consensus size: 51
4654 GATGCTTTTC
* *
4664 TTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGATTAGTCCACTG
1 TTTCCATTGTTTATGGCCTAACTATAATAATTATGGT-AGATTAGTCCACTG
* *
4716 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTGATTAGTCCACTG
1 TTTCCATTGTTTATGGCCTAACTATAATAATTATGGTAGATTAGTCCACTG
4767 T
1 T
4768 GAAACTTTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
51 14 0.29
52 34 0.71
ACGTcount: A:0.23, C:0.16, G:0.17, T:0.43
Consensus pattern (51 bp):
TTTCCATTGTTTATGGCCTAACTATAATAATTATGGTAGATTAGTCCACTG
Found at i:4863 original size:205 final size:206
Alignment explanation
Indices: 4510--4921 Score: 657
Period size: 205 Copynumber: 2.0 Consensus size: 206
4500 AATGCTTTTC
* ** *
4510 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTAAATTTAGTCCACTGTGAAGTTTTTAGT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTGAAACTTTTAGC
* * * *
4575 TCATTTGGAACACTTGTTATTTTGGTCCTTTCGGGGTCCATTAGTGACGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGAGGCCCATTAGTGACGTTTTGAAACGTCTTCG
*
4640 ATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGA
131 ATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGA
4705 TTAGTCCACTG
196 TTAGTCCACTG
**
4716 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTTGA-TTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTGAAACTTTTAGC
* *
4780 TCATTTGGAACACTTG-TATTTTGGGCGTTTCTAGGCCCATTAGTGACGTTTTGAAACGTCATTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTTTCGAGGCCCATTAGTGACGTTTTGAAACGTC-TTC
* * *
4844 GATTTGGCAATCCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
130 GATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAG
4909 ATTAGTCCACTG
195 ATTAGTCCACTG
4921 T
1 T
4922 GAAGTTTTTA
Statistics
Matches: 189, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
204 38 0.20
205 114 0.60
206 37 0.20
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (206 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTATGGTAAATTTAGTCCACTGTGAAACTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTTTCGAGGCCCATTAGTGACGTTTTGAAACGTCTTCG
ATCTGGCAAACCCCGATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGA
TTAGTCCACTG
Found at i:4999 original size:154 final size:154
Alignment explanation
Indices: 4716--5844 Score: 1674
Period size: 154 Copynumber: 7.3 Consensus size: 154
4706 TAGTCCACTG
* * **
4716 TTTCCATTGTTTATGGCCTAACTATAATCATTATGGT-TGATTAGTCCACTGTGAAACTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * ** *
4780 TCATTTGGAACACTTG-TATTTTGGGCGTTTCTAGGCCCATTAGTGACGTTTTGAAACGTCATTC
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTC-TTC
* * *
4844 GATTTGGCAATCCCCGATGCTTTTC
130 GATTTGGCAAACCTCAATGCTTTTC
*
4869 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTATC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * *
4934 TCATTTGGAACACTTGTAATTTTGAGCCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
* *
4999 ATTTGGGAAACCTCTATGCTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
* ** *
5023 TTTCCATTGTTTATGGCCAAACTATAATCATTTTGGTGAGATTAGTCCACTACGAAGTTTATAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
5088 TCA-TTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTGACGTTTTGAATCGACTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
* *
5152 ATTTGGAAAACCTCAATGGTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
*
5176 TTTTCCTATTGTTTATTAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTT
1 -TTTCC-ATTGTTTA-TGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTT
* * * *
5241 AGCTCATTTGGAACACTTGTAATATT-GACCTATCGGGGCCCATTAGTGTCGTTTTGAATCGTCT
63 AGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCT
5305 TCGATTTGGCAAACCTCAATGCTTTTC
128 TCGATTTGGCAAACCTCAATGCTTTTC
* * * * * *
5332 TTTCCATTGTTTATGGCCAAACCATAATCAATTTGGTCAGATTAGTCCACTGCGAACTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * *
5397 TCATTGGGAAAACTTGTTATTTTGGACCTATCAGGGCCCATTAGTGACGTTTTGAATCGACTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
* *
5462 ATTTGGAAAACCTCAATGGTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
* *
5486 TTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTATTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * **
5551 TCATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTTCCGTTTTGAATCGTCTTCG
66 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
5616 ATTTGGCAAACCTCAATGCTTTTC
131 ATTTGGCAAACCTCAATGCTTTTC
5640 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
5705 TCATTTGGAACACTTGTTATTTTGGGCCCT-TCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC
66 TCATTTGGAACACTTGTTATTTTGGG-CCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTC
* * *
5769 GATCTGGCAAACCCCGATGCTTTTC
130 GATTTGGCAAACCTCAATGCTTTTC
* *
5794 TTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGATTAGTCCACT
1 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACT
5845 TATTTACATT
Statistics
Matches: 879, Mismatches: 89, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
153 177 0.20
154 524 0.60
155 52 0.06
156 109 0.12
157 17 0.02
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.40
Consensus pattern (154 bp):
TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
ATTTGGCAAACCTCAATGCTTTTC
Found at i:6173 original size:511 final size:511
Alignment explanation
Indices: 5336--6559 Score: 1857
Period size: 511 Copynumber: 2.4 Consensus size: 511
5326 CTTTTCTTTC
* * * *
5336 CATTGTTTATGGCCAAACCATAATCAATTTGGTCAGATTAGTCCACTGCG-AACTTTTTAGCTCA
1 CATTGTTTATGGCCTAACTATAATC-ATTTGGT-GGATTAGTCCACTGTGAAAC-TTTTAGCTCA
* * *
5400 TTGGGAAAACTTGTTATTTTGGACCTATCAGGGCCCATTAGTGACGTTTTGAATCGACTTCGATT
63 TTTGGAACACTTGTTATTTTGGGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGA-TTCGATT
*
5465 TGGAAAACCTCAATGGTTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTA
127 TGGAAAACCTCAAT-GCTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTA
* *
5530 TTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAG
191 GTCCACTGTAAAGTTTTTAGCTCATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAG
5595 TTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
256 TTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
* *
5660 ACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
321 ACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACACTTGTAAT
* * * *
5725 TTTGGGCCCT-TCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATCTGGCAAACCCCGATGC
386 TTTGGG-CCTAACGGGGACCATTAGTGACGTTTTGAATCGTCTTCAATCTGGCAAACCCCAATGC
*
5789 -TTTTCTTTCCATTGTTTATGGCCTAACTGTAATAATTTTGGTGAGATTAGTCCACTTATTTA
450 TTTTTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCA-TTATTTA
5851 CATTGTTTATGGCCTAACTATAATCATTATGGTGGATTAGTCCACTGTGAAACTTTTAGCTCATT
1 CATTGTTTATGGCCTAACTATAATCATT-TGGTGGATTAGTCCACTGTGAAACTTTTAGCTCATT
* * *
5916 TGGAACACTTGTTATTTTGGGCCAATC-GGGACCATTACTGACG-TTTGAATCGATTCGATTTGG
65 TGGAACACTTGTTATTTTGGGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGATTCGATTTGG
5979 AAAACCTCAATGCTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCC
130 AAAACCTCAATGCTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCC
*
6044 ACTGTAAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGAACCTATCGGGGACCATTAGTGT
195 ACTGTAAAGTTTTTAGCTCATTTGGAACACTTGTTATATTGG-ACCTATCGGGGACCATTAGT-T
* *
6109 -CGTTTTGAATCGTCTTCGATTTGGGAAAGCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC
258 CCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAAC
6173 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACACTTGTAATTT
323 TATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACACTTGTAATTT
* * * * *
6238 TGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATTGTCTTCAATTTGGTAAACCTCAATGCTTT
388 TGGGCCTAACGGGGACCATTAGTGACGTTTTGAATCGTCTTCAATCTGGCAAACCCCAATGCTTT
* * *
6303 TTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTGTTTC
453 TTCTTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCATTATTTA
* * * * * **
6362 CATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTGCATTGTGAAGTTTTTAGCTCAT
1 CATTGTTTATGGCCTAACTATAATCA-TTTGGTG-GATTAGTCCACTGTGAAACTTTTAGCTCAT
* * * ** *
6427 TTGGAACACTTCTTATTTTGGGCCTATCGGGGCCCATTTGTTCCGTTTTGAATCGTCTTCGATTT
64 TTGGAACACTTGTTATTTTGGGCCTATCAGGGCCCATTAGTGACGTTTTGAATCG-ATTCGATTT
* * *
6492 GGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATTAG
128 GGAAAACCTCAATGC-TTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAG
6557 TCC
192 TCC
6560 GAGACTACCA
Statistics
Matches: 648, Mismatches: 49, Indels: 23
0.90 0.07 0.03
Matches are distributed among these distances:
510 95 0.15
511 248 0.38
512 117 0.18
513 25 0.04
514 61 0.09
515 52 0.08
516 50 0.08
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (511 bp):
CATTGTTTATGGCCTAACTATAATCATTTGGTGGATTAGTCCACTGTGAAACTTTTAGCTCATTT
GGAACACTTGTTATTTTGGGCCTATCAGGGCCCATTAGTGACGTTTTGAATCGATTCGATTTGGA
AAACCTCAATGCTTTCTTTCCATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
CTGTAAAGTTTTTAGCTCATTTGGAACACTTGTTATATTGGACCTATCGGGGACCATTAGTTCCG
TTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
AATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAATTTGGAACACTTGTAATTTTGG
GCCTAACGGGGACCATTAGTGACGTTTTGAATCGTCTTCAATCTGGCAAACCCCAATGCTTTTTC
TTTCCATTGTTTATGGCCTAACTATAATAATTTTGGTGAGATTAGTCCATTATTTA
Found at i:6188 original size:155 final size:154
Alignment explanation
Indices: 5851--6354 Score: 786
Period size: 155 Copynumber: 3.3 Consensus size: 154
5841 CACTTATTTA
* *
5851 CATTGTTTATGGCCTAACTATAATCATTATGGTG-GATTAGTCCACTGTGAAA-CTTTTAGCTCA
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGT-AAAGTTTTTAGCTCA
* * * *
5914 TTTGGAACACTTGTTATTTTGGGCCAATC-GGGACCATTACTGACG-TTTGAATCG-ATTCGATT
65 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGTCGTTTTGAATCGTCTTCGATT
5976 TGGAAAACCTCAATGC-TTTCTTTC
130 TGGAAAACCTCAATGCTTTTCTTTC
*
6000 CATTGTTTATAGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTAAAGTTTTTAGCTCAT
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTAAAGTTTTTAGCTCAT
*
6065 TTGGAACACTTGTTATTTTGGAACCTATCGGGGACCATTAGTGTCGTTTTGAATCGTCTTCGATT
66 TTGGAACACTTGTTATTTTGG-GCCTATCGGGGACCATTAGTGTCGTTTTGAATCGTCTTCGATT
* *
6130 TGGGAAAGCTCAATGCTTTTCTTTC
130 TGGAAAACCTCAATGCTTTTCTTTC
* *
6155 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTAAT
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTAAAGTTTTTAGCTCAT
* * * *
6220 TTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATTGTCTTCAATTT
66 TTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGTCGTTTTGAATCGTCTTCGATTT
*
6285 GGTAAACCTCAATGCTTTTTCTTTC
131 GGAAAACCTCAATGC-TTTTCTTTC
6310 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
1 CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCA
6355 TTGTTTCCAT
Statistics
Matches: 327, Mismatches: 20, Indels: 10
0.92 0.06 0.03
Matches are distributed among these distances:
149 35 0.11
150 46 0.14
151 5 0.02
152 14 0.04
153 9 0.03
154 74 0.23
155 144 0.44
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.40
Consensus pattern (154 bp):
CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTAAAGTTTTTAGCTCAT
TTGGAACACTTGTTATTTTGGGCCTATCGGGGACCATTAGTGTCGTTTTGAATCGTCTTCGATTT
GGAAAACCTCAATGCTTTTCTTTC
Found at i:6363 original size:52 final size:52
Alignment explanation
Indices: 6306--6410 Score: 174
Period size: 52 Copynumber: 2.0 Consensus size: 52
6296 ATGCTTTTTC
* * *
6306 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCATTG
1 TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTCCATTG
*
6358 TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTGCATTG
1 TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTCCATTG
6410 T
1 T
6411 GAAGTTTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.44
Consensus pattern (52 bp):
TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTCCATTG
Found at i:6506 original size:207 final size:206
Alignment explanation
Indices: 6151--6559 Score: 658
Period size: 207 Copynumber: 2.0 Consensus size: 206
6141 AATGCTTTTC
* * *
6151 TTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGC
* *
6216 TAATTTGGAACACTTGTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATTGTCTTCA
66 TAATTTGGAACACTTCTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATCGTCTTCA
* *
6281 ATTTGGTAAACCTCAATGCTTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAG
131 ATTTGGCAAACCTCAATGC-TTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAG
6346 ATTAGTCCATTG
195 ATTAGTCCATTG
* *
6358 TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTGCATTGTGAAGTTTTTAGC
1 TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGC
* * * * *
6423 TCATTTGGAACACTTCTTATTTTGGGCCTATCGGGGCCCATTTGT-TCCGTTTTGAATCGTCTTC
66 TAATTTGGAACACTTCTAATTTTGGGCCTAACGGGGACCATTAGTGT-CGTTTTGAATCGTCTTC
*
6487 GATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAG
130 AATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAG
6552 ATTAGTCC
195 ATTAGTCC
6560 GAGACTACCA
Statistics
Matches: 186, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
206 53 0.28
207 133 0.72
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (206 bp):
TTTCCATTGTTTATGGACTAACTACAATCATTTTGATGAGATTAGTCCACTGTGAAGTTTTTAGC
TAATTTGGAACACTTCTAATTTTGGGCCTAACGGGGACCATTAGTGTCGTTTTGAATCGTCTTCA
ATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGA
TTAGTCCATTG
Done.