Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01011477.1 Corchorus olitorius cultivar O-4 contig11510, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40688
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Found at i:4592 original size:15 final size:15
Alignment explanation
Indices: 4574--4605 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
4564 GCGAAATTTC
*
4574 AAAATTCGAATTTTG
1 AAAATTCAAATTTTG
4589 AAAATTCAAATTTTG
1 AAAATTCAAATTTTG
4604 AA
1 AA
4606 TTTCGGAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.09, T:0.38
Consensus pattern (15 bp):
AAAATTCAAATTTTG
Found at i:4596 original size:22 final size:22
Alignment explanation
Indices: 4566--4608 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
4556 TTTTTGGCGC
*
4566 GAAATTTCAAAATTCGAATTTT
1 GAAAATTCAAAATTCGAATTTT
* *
4588 GAAAATTCAAATTTTGAATTT
1 GAAAATTCAAAATTCGAATTT
4609 CGGAAGTTGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (22 bp):
GAAAATTCAAAATTCGAATTTT
Found at i:8437 original size:76 final size:76
Alignment explanation
Indices: 8334--8624 Score: 474
Period size: 76 Copynumber: 3.8 Consensus size: 76
8324 CTCGTGGGCG
* * * *
8334 CTCAGCCGTTGGGTGTGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGGAGAGGAACGGGGGCGC
1 CTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGGGCGC
8399 CAGTCTAGGCA
66 CAGTCTAGGCA
*
8410 CTCAGCCGTTGAGTGAGCGGTGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGGGCGC
1 CTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGGGCGC
*
8475 CAGTCTAGGCG
66 CAGTCTAGGCA
*
8486 CTCAGCCGTTGAGTGAGCGGCGTCGGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGGGCGC
1 CTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGGGCGC
*
8551 CAGTTTAGGCA
66 CAGTCTAGGCA
* * * *
8562 CTCAGCCGTTGAGTGAGCGGCGTCTGCATGGACGCTCTGTCTCAGTAGTAGACGAACGGGGGC
1 CTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGGGC
8625 ACCATTCCAG
Statistics
Matches: 200, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 200 1.00
ACGTcount: A:0.15, C:0.25, G:0.38, T:0.21
Consensus pattern (76 bp):
CTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGGGCGC
CAGTCTAGGCA
Found at i:9490 original size:76 final size:76
Alignment explanation
Indices: 9390--9632 Score: 351
Period size: 76 Copynumber: 3.2 Consensus size: 76
9380 TTGTCTCGTG
* * *
9390 GGCGCTCAGCCGTTGGGTGTGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGGAGACGAACGGGG
1 GGCGCTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGG
9455 GCGCCAGTCTA
66 GCGCCAGTCTA
9466 GGCGCTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGG
1 GGCGCTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGG
*
9531 GCGCCAGTTTA
66 GCGCCAGTCTA
* * * * * * *
9542 GACACTCAGCCGTTGAGTGAGCGGCGTCTGCATGGACGCTCTGTCTTAGTAGTAGACGAACGGGG
1 GGCGCTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGG
* * *
9607 GCACCATTCCA
66 GCGCCAGTCTA
*
9618 GGTGCTCAGCCGTTG
1 GGCGCTCAGCCGTTG
9633 TTTGAAACAT
Statistics
Matches: 149, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
76 149 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (76 bp):
GGCGCTCAGCCGTTGAGTGAGCGGCGTCTGCGTGGACGCTTTGTCTCACTGGTAGACGAACGGGG
GCGCCAGTCTA
Found at i:16484 original size:22 final size:22
Alignment explanation
Indices: 16459--16557 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
16449 TATTTTTATG
* *
16459 AAATTTTGATAATTACCCTATT
1 AAATTTTGATAATTACCATATA
**
16481 AAATTTTGATAACCACCATATA
1 AAATTTTGATAATTACCATATA
16503 AAATTTTGATAATTACC-TATA
1 AAATTTTGATAATTACCATATA
* * * *
16524 AAAATGTGATAAACT-CCATATG
1 AAATTTTGAT-AATTACCATATA
*
16546 AAACTTTGATAA
1 AAATTTTGATAA
16558 CCTAATTATG
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
21 16 0.25
22 47 0.75
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.36
Consensus pattern (22 bp):
AAATTTTGATAATTACCATATA
Found at i:16543 original size:43 final size:44
Alignment explanation
Indices: 16459--16557 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 44
16449 TATTTTTATG
* * * *
16459 AAATTTTGATAATTACCCTATTAAATTTTGATAACCACCATATA
1 AAATTTTGATAATTACCCTATAAAAATGTGATAAACACCATATA
* *
16503 AAATTTTGATAATTA-CCTATAAAAATGTGATAAACTCCATATG
1 AAATTTTGATAATTACCCTATAAAAATGTGATAAACACCATATA
*
16546 AAACTTTGATAA
1 AAATTTTGATAA
16558 CCTAATTATG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 33 0.69
44 15 0.31
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.36
Consensus pattern (44 bp):
AAATTTTGATAATTACCCTATAAAAATGTGATAAACACCATATA
Found at i:16608 original size:20 final size:21
Alignment explanation
Indices: 16564--16658 Score: 77
Period size: 22 Copynumber: 4.5 Consensus size: 21
16554 ATAACCTAAT
* *
16564 TATGAAATTTTAATAAACTTTCC
1 TATG-AATTTTGATAATC-TTCC
*
16587 TATGAATTTTG-TAACCTTCC
1 TATGAATTTTGATAATCTTCC
* *
16607 TATGATTTTTGATAATCTTTC
1 TATGAATTTTGATAATCTTCC
* * *
16628 TGTGAGATTTTGTTAATCTCCC
1 TATGA-ATTTTGATAATCTTCC
16650 TAT-AATTTT
1 TATGAATTTT
16659 TTGATAATAT
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
20 19 0.32
21 16 0.27
22 20 0.34
23 4 0.07
ACGTcount: A:0.27, C:0.14, G:0.09, T:0.49
Consensus pattern (21 bp):
TATGAATTTTGATAATCTTCC
Found at i:18716 original size:2 final size:2
Alignment explanation
Indices: 18709--18735 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
18699 CCCCTTATTC
18709 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
18736 GGAATAGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:18781 original size:2 final size:2
Alignment explanation
Indices: 18774--18808 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
18764 ATCTCCATGT
18774 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
18809 GGAATAGACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:18800 original size:73 final size:73
Alignment explanation
Indices: 18709--18849 Score: 282
Period size: 73 Copynumber: 1.9 Consensus size: 73
18699 CCCCTTATTC
18709 TATATATATATATATATATATATATATGGAATAGACACGATTCATTGCTATCTTTATCTCCATGT
1 TATATATATATATATATATATATATATGGAATAGACACGATTCATTGCTATCTTTATCTCCATGT
18774 TATATATA
66 TATATATA
18782 TATATATATATATATATATATATATATGGAATAGACACGATTCATTGCTATCTTTATCTCCATGT
1 TATATATATATATATATATATATATATGGAATAGACACGATTCATTGCTATCTTTATCTCCATGT
18847 TAT
66 TAT
18850 TCCTTTGTTA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (73 bp):
TATATATATATATATATATATATATATGGAATAGACACGATTCATTGCTATCTTTATCTCCATGT
TATATATA
Found at i:22267 original size:72 final size:71
Alignment explanation
Indices: 22084--22755 Score: 722
Period size: 72 Copynumber: 9.1 Consensus size: 71
22074 GCCCTTCGTC
* * * * * *
22084 TCCCACGGCTGAGTGCCTAGACTGGGACCCCTGTCCCTCAGTGAGGCAGAGCGTCCAAGCAGATG
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTCCC-GAATGAGGCTGAGCGTCCATGCAGATG
22149 CCACTCA
65 CCACTCA
* * * *
22156 CTCATCCAACGGCTGAGTGCCTAGATTGGCACTCTCGTCCCAGAATGAGGCTGAGCGTCCACGCA
1 -TC--CC-ACGGCTGAGTGCCTAGACTGGCACCCCCGTCCC-GAATGAGGCTGAGCGTCCATGCA
*
22221 GACGCCACTCA
61 GATGCCACTCA
* * *
22232 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTCCCCTAGTGAGGCAGAGCGTCCATGCAGATG
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGT-CCCGAATGAGGCTGAGCGTCCATGCAGATG
22297 CCACTCA
65 CCACTCA
22304 CTCATCCAACGGCTGAGTGCCTAGACTGGCA-CCCCGTCTCCGAATGAGGCTGAGCGTCCATGCA
1 -TC--CC-ACGGCTGAGTGCCTAGACTGGCACCCCCGTC-CCGAATGAGGCTGAGCGTCCATGCA
22368 GATGCCACTCA
61 GATGCCACTCA
* *
22379 TCCCACGACTGAGTGCCTAGACTGGGACCCCCGTCTCCGAATGAGGCTGAGCGTCCATGCAGATG
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTC-CCGAATGAGGCTGAGCGTCCATGCAGATG
22444 CCACTCA
65 CCACTCA
*
22451 TCCCACGGCTGAGTGCCTACACTGGCACCCCCGTCTCCGAATGAGGCTGAGCGTCCATGCAGATG
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTC-CCGAATGAGGCTGAGCGTCCATGCAGATG
22516 CCACTCA
65 CCACTCA
* * * * * * *
22523 TCCCACGGCTGAGTGCCAAGACTAGCACCCCCGTTAAATTCTC-AGTGAGGCAGAGCATCCACGC
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCG------TCCCGAATGAGGCTGAGCGTCCATGC
22587 AGATGCCACTCA
60 AGATGCCACTCA
* * * * * *
22599 CTCAACAC--TTGAGTGCCTAGACTGGCACCCTCGTCTCAGAATGAGACTGAGCGTCCATGCAAA
1 -TC-CCACGGCTGAGTGCCTAGACTGGCACCCCCGTC-CCGAATGAGGCTGAGCGTCCATGCAGA
*
22662 CGCCACTCA
63 TGCCACTCA
* ** * *
22671 TCCCACGGTTGAGTGCCTAGACTGGCGTCCCCGTCTCACTCTCAATGAGGCTGAGCGTCCACGCA
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCG--TC-C-C-GAATGAGGCTGAGCGTCCATGCA
*
22736 GATGCCATTCA
61 GATGCCACTCA
*
22747 TCCGACGGC
1 TCCCACGGC
22756 GGAGGGCCCG
Statistics
Matches: 510, Mismatches: 63, Indels: 49
0.82 0.10 0.08
Matches are distributed among these distances:
70 5 0.01
71 23 0.05
72 249 0.49
73 9 0.02
74 6 0.01
75 45 0.09
76 165 0.32
77 3 0.01
78 5 0.01
ACGTcount: A:0.22, C:0.35, G:0.25, T:0.18
Consensus pattern (71 bp):
TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTCCCGAATGAGGCTGAGCGTCCATGCAGATGC
CACTCA
Found at i:22667 original size:148 final size:148
Alignment explanation
Indices: 22084--22742 Score: 829
Period size: 148 Copynumber: 4.5 Consensus size: 148
22074 GCCCTTCGTC
* * * *
22084 TCCCACGGCTGAGTGCCTAGACTGGGACCCCTGT-CCCTCAGTGAGGCAGAGCGTCCAAGCAGAT
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTACTCTCAGTGAGGCAGAGCGTCCACGCAGAT
* * *
22148 GCCACTCACTCATCCAACGGCTGAGTGCCTAGATTGGCACTCTCGTCCCAGAATGAGGCTGAGCG
66 GCCACTCACTCATCCAAC-GCTGAGTGCCTAGACTGGCACCCTCGTCTCAGAATGAGGCTGAGCG
*
22213 TCCACGCAGACGCCACTCA
130 TCCATGCAGACGCCACTCA
* * *
22232 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTCCCCT-AGTGAGGCAGAGCGTCCATGCAGAT
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTACTCTCAGTGAGGCAGAGCGTCCACGCAGAT
*
22296 GCCACTCACTCATCCAACGGCTGAGTGCCTAGACTGGCACCC-CGTCTCCGAATGAGGCTGAGCG
66 GCCACTCACTCATCCAAC-GCTGAGTGCCTAGACTGGCACCCTCGTCTCAGAATGAGGCTGAGCG
*
22360 TCCATGCAGATGCCACTCA
130 TCCATGCAGACGCCACTCA
* * * * *
22379 TCCCACGACTGAGTGCCTAGACTGGGACCCCCGT-CTC-CGAATGAGGCTGAGCGTCCATGCAGA
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTACTCTC-AGTGAGGCAGAGCGTCCACGCAGA
* * *
22442 TGCCACTCA-TC--CC-ACGGCTGAGTGCCTACACTGGCACCCCCGTCTCCGAATGAGGCTGAGC
65 TGCCACTCACTCATCCAAC-GCTGAGTGCCTAGACTGGCACCCTCGTCTCAGAATGAGGCTGAGC
*
22503 GTCCATGCAGATGCCACTCA
129 GTCCATGCAGACGCCACTCA
* * * *
22523 TCCCACGGCTGAGTGCCAAGACTAGCACCCCCGTTAAATTCTCAGTGAGGCAGAGCATCCACGCA
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCG-T--ACTCTCAGTGAGGCAGAGCGTCCACGCA
* * *
22588 GATGCCACTCACTCA-AC-AC-TTGAGTGCCTAGACTGGCACCCTCGTCTCAGAATGAGACTGAG
63 GATGCCACTCACTCATCCAACGCTGAGTGCCTAGACTGGCACCCTCGTCTCAGAATGAGGCTGAG
*
22650 CGTCCATGCAAACGCCACTCA
128 CGTCCATGCAGACGCCACTCA
* ** * *
22671 TCCCACGGTTGAGTGCCTAGACTGGCGTCCCCGTCTCACTCTCAATGAGGCTGAGCGTCCACGCA
1 TCCCACGGCTGAGTGCCTAGACTGGCACCCCCG--T-ACTCTCAGTGAGGCAGAGCGTCCACGCA
22736 GATGCCA
63 GATGCCA
22743 TTCATCCGAC
Statistics
Matches: 456, Mismatches: 43, Indels: 24
0.87 0.08 0.05
Matches are distributed among these distances:
143 25 0.05
144 72 0.16
145 1 0.00
146 4 0.01
147 100 0.22
148 243 0.53
149 8 0.02
150 3 0.01
ACGTcount: A:0.22, C:0.35, G:0.25, T:0.18
Consensus pattern (148 bp):
TCCCACGGCTGAGTGCCTAGACTGGCACCCCCGTACTCTCAGTGAGGCAGAGCGTCCACGCAGAT
GCCACTCACTCATCCAACGCTGAGTGCCTAGACTGGCACCCTCGTCTCAGAATGAGGCTGAGCGT
CCATGCAGACGCCACTCA
Found at i:28862 original size:2 final size:2
Alignment explanation
Indices: 28855--28895 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
28845 TAATATTTAG
28855 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
28896 GATCGATGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29127 original size:44 final size:43
Alignment explanation
Indices: 29064--29151 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 43
29054 TTTATGATTG
*
29064 ATTCATCTTATAGCTTTTGTATAGGCTATGAACATCGGAACATC
1 ATTCATCTTATAGCTTTTGTATAGGCTATGAACAT-AGAACATC
29108 ATTCATCTTATAGCTTTTGTATAGGCTATGAACATAGAACATC
1 ATTCATCTTATAGCTTTTGTATAGGCTATGAACATAGAACATC
29151 A
1 A
29152 GAAGTATAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
43 8 0.19
44 35 0.81
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (43 bp):
ATTCATCTTATAGCTTTTGTATAGGCTATGAACATAGAACATC
Found at i:29301 original size:17 final size:17
Alignment explanation
Indices: 29279--29317 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
29269 AGAACATCGG
29279 AAGTATAAAAAGGATAT
1 AAGTATAAAAAGGATAT
29296 AAGTATAAAAAGGATAT
1 AAGTATAAAAAGGATAT
29313 AAGTA
1 AAGTA
29318 AAATATTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.18, T:0.23
Consensus pattern (17 bp):
AAGTATAAAAAGGATAT
Found at i:31444 original size:26 final size:26
Alignment explanation
Indices: 31414--31468 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
31404 TTTGACACCT
** *
31414 TCTGGACCGCCTCTCTCTCGCTACTC
1 TCTGGACAACCTCTCTCTCACTACTC
*
31440 TCTGGATAACCTCTCTCTCACTACTC
1 TCTGGACAACCTCTCTCTCACTACTC
31466 TCT
1 TCT
31469 TCAGGACCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.42, G:0.11, T:0.35
Consensus pattern (26 bp):
TCTGGACAACCTCTCTCTCACTACTC
Found at i:35468 original size:3 final size:3
Alignment explanation
Indices: 35460--35497 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
35450 TTTAGTGATA
35460 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
35498 CCCTAATTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:38917 original size:29 final size:29
Alignment explanation
Indices: 38832--38918 Score: 84
Period size: 29 Copynumber: 2.9 Consensus size: 29
38822 GGTCCGTTTC
38832 ATGGAGGGACTAAATTGATCTCTTTTCAATA
1 ATGGAGGGACTAAATTGAT-TCTTTTC-ATA
* ** ****
38863 GTACAGGGACTAAATTGACAGATTTCATA
1 ATGGAGGGACTAAATTGATTCTTTTCATA
*
38892 ATGGAGGGACTAAATTGATTTTTTTCA
1 ATGGAGGGACTAAATTGATTCTTTTCA
38919 ATAGTACAGG
Statistics
Matches: 42, Mismatches: 14, Indels: 2
0.72 0.24 0.03
Matches are distributed among these distances:
29 23 0.55
30 4 0.10
31 15 0.36
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.34
Consensus pattern (29 bp):
ATGGAGGGACTAAATTGATTCTTTTCATA
Done.