Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011482.1 Corchorus olitorius cultivar O-4 contig11515, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8819
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28


Found at i:1433 original size:15 final size:15

Alignment explanation


    Indices: 1413--1457  Score: 90
    Period size: 15  Copynumber: 3.0  Consensus size: 15

       1403 GTCTTCTGAT

                           
       1413 CTATAACCATTTTCG
          1 CTATAACCATTTTCG

                           
       1428 CTATAACCATTTTCG
          1 CTATAACCATTTTCG

                           
       1443 CTATAACCATTTTCG
          1 CTATAACCATTTTCG

       1458 TATGCTTTCT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   30  1.00

ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40


Consensus pattern (15 bp):   
CTATAACCATTTTCG
Done.