Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011484.1 Corchorus olitorius cultivar O-4 contig11517, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2916

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
397--530
21
6.4
21
92
1
191
26
26
17
29
1.97
497--560
21
3.0
21
90
0
92
23
28
17
31
1.97
397--555
42
3.8
42
84
5
180
26
26
16
30
1.97
397--551
63
2.5
63
85
6
190
26
26
16
30
1.97
658--2085
154
9.2
155
92
2
2297
20
18
20
41
1.91
658--2085
620
2.3
616
91
2
2303
20
18
20
41
1.91
2024--2149
64
2.0
64
93
3
218
20
19
15
43
1.88
1716--2456
371
2.0
372
91
2
1197
20
18
19
41
1.90
2085--2616
154
3.5
154
91
1
845
21
18
18
41
1.91
1566--2914
525
2.6
520
87
5
1899
21
18
19
41
1.91
2260--2914
358
1.8
359
91
1
1089
22
16
19
41
1.90
2414--2820
204
2.0
204
89
0
618
23
15
19
40
1.90
2632--2914
154
1.8
154
89
0
440
21
16
19
42
1.89

Tables:   1

The End!