Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01011492.1 Corchorus olitorius cultivar O-4 contig11525, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14471

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2793--3327
30
18.0
30
87
3
679
46
20
13
19
1.83
3543--3790
69
3.6
69
94
0
433
29
16
28
26
1.97
5085--5126
12
3.7
12
84
15
54
7
14
0
78
0.95
5071--5126
11
5.5
11
84
14
59
5
14
0
80
0.88
5408--5472
14
4.8
13
76
16
62
13
0
10
75
1.05
5427--5474
8
6.4
8
88
9
66
12
0
8
79
0.94
5433--5474
7
5.9
7
91
2
57
11
0
7
80
0.88
5431--5485
15
3.7
15
83
9
69
12
0
9
78
0.97
5870--5898
8
3.6
8
100
0
58
10
13
0
75
1.04
10647--10695
22
2.3
21
80
16
57
36
0
44
18
1.50
12738--13356
30
21.0
30
87
4
705
45
19
15
19
1.85
12732--13356
121
5.3
120
83
6
717
45
18
15
19
1.85
13222--13354
25
5.1
25
90
8
212
45
22
11
20
1.82
13849--14302
35
13.1
35
81
5
447
41
19
21
18
1.91

Tables:   1

The End!