Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011495.1 Corchorus olitorius cultivar O-4 contig11528, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 826

Length: 1377
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1186 original size:72 final size:72

Alignment explanation


    Indices: 1062--1206  Score: 229
    Period size: 72  Copynumber: 2.0  Consensus size: 72

       1052 GCGAGAGTAG

                                                                             
       1062 TACTAGGATGGGTGACCTCCTGGGAAGTACTCGTGTTGCACCTCTTTATTCATTTATATTTACTT
          1 TACTAGGATGGGTGACCTCCTGGGAAGTACTCGTGTTGCACCTCTTTATTCATTTATATTTACTT

                   
       1127 TTCTTCT
         66 TTCTTCT

                               *        *                   *       *     *  
       1134 TACTAGGATGGGTGACCTCTTGGGAAGTCCTCGTGTTGCACC-CTTTTTTTCATTTTTATTTTCT
          1 TACTAGGATGGGTGACCTCCTGGGAAGTACTCGTGTTGCACCTC-TTTATTCATTTATATTTACT

                    
       1198 TTTCTTCT
         65 TTTCTTCT

             
       1206 T
          1 T

       1207 CTTTCGAAAT


Statistics
Matches: 67,  Mismatches: 5, Indels: 2
        0.91            0.07        0.03

Matches are distributed among these distances:
  71    1  0.01
  72   66  0.99

ACGTcount: A:0.15, C:0.21, G:0.18, T:0.46


Consensus pattern (72 bp):   
TACTAGGATGGGTGACCTCCTGGGAAGTACTCGTGTTGCACCTCTTTATTCATTTATATTTACTT
TTCTTCT
Done.