Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011497.1 Corchorus olitorius cultivar O-4 contig11530, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6448
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29


Found at i:355 original size:23 final size:23

Alignment explanation


    Indices: 325--370  Score: 83
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        315 AAAAAACATT

                           *       
        325 ACCAAAATGATCTCTGTTCCAAA
          1 ACCAAAATGATCTCTCTTCCAAA

                                   
        348 ACCAAAATGATCTCTCTTCCAAA
          1 ACCAAAATGATCTCTCTTCCAAA

        371 TTTTGACATT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   22  1.00

ACGTcount: A:0.39, C:0.28, G:0.07, T:0.26


Consensus pattern (23 bp):   
ACCAAAATGATCTCTCTTCCAAA

Found at i:5478 original size:20 final size:20

Alignment explanation


    Indices: 5453--5512  Score: 120
    Period size: 20  Copynumber: 3.0  Consensus size: 20

       5443 ATTGGCATAT

                                
       5453 TTCAATCAACTCTATGCTTG
          1 TTCAATCAACTCTATGCTTG

                                
       5473 TTCAATCAACTCTATGCTTG
          1 TTCAATCAACTCTATGCTTG

                                
       5493 TTCAATCAACTCTATGCTTG
          1 TTCAATCAACTCTATGCTTG

       5513 AGCATAGGCA


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   40  1.00

ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40


Consensus pattern (20 bp):   
TTCAATCAACTCTATGCTTG
Done.