Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001150.1 Corchorus olitorius cultivar O-4 contig01150, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37


Found at i:603 original size:11 final size:11

Alignment explanation


    Indices: 589--626  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

        579 ATTCATAACA

                       
        589 AATTTATAATT
          1 AATTTATAATT

                       
        600 AATTTATAATT
          1 AATTTATAATT

                        
        611 -ATTTGATAATT
          1 AATTT-ATAATT

            *    
        622 TATTT
          1 AATTT

        627 TATATAGGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  10    4  0.16
  11   17  0.68
  12    4  0.16

ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58


Consensus pattern (11 bp):   
AATTTATAATT

Found at i:998 original size:22 final size:22

Alignment explanation


    Indices: 938--1037  Score: 87
    Period size: 22  Copynumber: 4.5  Consensus size: 22

        928 TTTAAATTAA

                             *     
        938 ATATGAAATTTTGATAAGCTCGC
          1 ATATGAAATTTTGATAATCTC-C

              * *      **         
        961 -TTTAAAATTTCAATAATCTCC
          1 ATATGAAATTTTGATAATCTCC

               *                * 
        982 ATAGGAAATTTTGATAA-CTAC
          1 ATATGAAATTTTGATAATCTCC

                               *   
       1003 ATTATGAAATTTTGATAATATCC
          1 A-TATGAAATTTTGATAATCTCC

            *           
       1026 TTATGAAATTTT
          1 ATATGAAATTTT

       1038 TTATGACCGT


Statistics
Matches: 59,  Mismatches: 15, Indels: 7
        0.73            0.19        0.09

Matches are distributed among these distances:
  21    5  0.08
  22   52  0.88
  23    2  0.03

ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41


Consensus pattern (22 bp):   
ATATGAAATTTTGATAATCTCC
Done.