Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011502.1 Corchorus olitorius cultivar O-4 contig11535, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6425
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27


Found at i:1820 original size:23 final size:23

Alignment explanation


    Indices: 1794--1840  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1784 ACGATACTAC

                                   
       1794 CAGACGCACCTTGGTACTTCTAT
          1 CAGACGCACCTTGGTACTTCTAT

                                   
       1817 CAGACGCACCTTGGTACTTCTAT
          1 CAGACGCACCTTGGTACTTCTAT

             
       1840 C
          1 C

       1841 CGCCAATCAA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.21, C:0.32, G:0.17, T:0.30


Consensus pattern (23 bp):   
CAGACGCACCTTGGTACTTCTAT

Found at i:3217 original size:23 final size:24

Alignment explanation


    Indices: 3168--3218  Score: 66
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       3158 TTCCATATCG

                 *  *         **    
       3168 AAATATCAGTTGAAAAAATCATAA
          1 AAATAGCAATTGAAAAAAGAATAA

                                    
       3192 AAATAGCAATTGAAAAAAGAATAA
          1 AAATAGCAATTGAAAAAAGAATAA

               
       3216 AAA
          1 AAA

       3219 AAAATGCCTA


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.65, C:0.06, G:0.10, T:0.20


Consensus pattern (24 bp):   
AAATAGCAATTGAAAAAAGAATAA
Done.