Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011506.1 Corchorus olitorius cultivar O-4 contig11539, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5990
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28


Found at i:3484 original size:15 final size:15

Alignment explanation


    Indices: 3466--3495  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       3456 TCATTTCGTC

                           
       3466 GTTGCTCATTCCCGT
          1 GTTGCTCATTCCCGT

                           
       3481 GTTGCTCATTCCCGT
          1 GTTGCTCATTCCCGT

       3496 TAGGCCGAAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.07, C:0.33, G:0.20, T:0.40


Consensus pattern (15 bp):   
GTTGCTCATTCCCGT

Found at i:4923 original size:23 final size:23

Alignment explanation


    Indices: 4893--4940  Score: 96
    Period size: 23  Copynumber: 2.1  Consensus size: 23

       4883 AAACTGCCAA

                                   
       4893 CAAAGGTCTGTTGGGTTTATACT
          1 CAAAGGTCTGTTGGGTTTATACT

                                   
       4916 CAAAGGTCTGTTGGGTTTATACT
          1 CAAAGGTCTGTTGGGTTTATACT

              
       4939 CA
          1 CA

       4941 GTTGATTTGG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   25  1.00

ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38


Consensus pattern (23 bp):   
CAAAGGTCTGTTGGGTTTATACT
Done.