Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011510.1 Corchorus olitorius cultivar O-4 contig11543, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25


Found at i:302 original size:154 final size:154

Alignment explanation


    Indices: 1--423  Score: 715
    Period size: 154  Copynumber: 2.8  Consensus size: 154

                                                    *                        
          1 ACGATTCAAAACGGAACTAAT-GGCCCCGAAAGGCCTAAAGTAACAAGTGTTCCAAATGAGCTAA
          1 ACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAA

                                                  *                     *    
         65 AAACTTCACAGTGGACTAATCTCACCAAAATTATTATATTTAGGCCATAAACAATGGAAAGAAAA
         66 AAACTTCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAACAATGGAAACAAAA

                                *   
        130 GCATCGAGGGTTGCCAAATCGAAG
        131 GCATCGAGGGTTGCCAAATCAAAG

                              *                                              
        154 ACGATTCAAAACGGAACTTATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAA
          1 ACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAA

                                                                             
        219 AAACTTCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAACAATGGAAACAAAA
         66 AAACTTCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAACAATGGAAACAAAA

                                    
        284 GCATCGAGGGTTGCCAAATCAAAG
        131 GCATCGAGGGTTGCCAAATCAAAG

                                        *  *     *                           
        308 ACGATTCAAAAC-GACACTAATGGGCCCTGATAGGCCCAAAATAACAAGTGTTCCAAATGAGCTA
          1 ACGATTCAAAACGGA-ACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTA

                       ***                  *                   
        372 AAAACTTCACAAAAGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAA
         65 AAAACTTCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAA

        424 TGATACGAAT


Statistics
Matches: 255,  Mismatches: 13, Indels: 3
        0.94            0.05        0.01

Matches are distributed among these distances:
 153   22  0.09
 154  233  0.91

ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20


Consensus pattern (154 bp):   
ACGATTCAAAACGGAACTAATGGGCCCCGAAAGGCCTAAAATAACAAGTGTTCCAAATGAGCTAA
AAACTTCACAGTGGACTAATCTCACCAAAATTATTATAGTTAGGCCATAAACAATGGAAACAAAA
GCATCGAGGGTTGCCAAATCAAAG
Done.