Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011511.1 Corchorus olitorius cultivar O-4 contig11544, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4752
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:1592 original size:14 final size:17

Alignment explanation


    Indices: 1558--1592  Score: 70
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1548 CTCCTTACGT

                             
       1558 TAGTTCTAAATAAATAG
          1 TAGTTCTAAATAAATAG

                             
       1575 TAGTTCTAAATAAATAG
          1 TAGTTCTAAATAAATAG

             
       1592 T
          1 T

       1593 GATAGCGACC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   18  1.00

ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37


Consensus pattern (17 bp):   
TAGTTCTAAATAAATAG

Found at i:3110 original size:24 final size:24

Alignment explanation


    Indices: 3083--3129  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3073 TCATTCCTTG

                                    
       3083 GTGCAAATGAGATTGCTACTGGTA
          1 GTGCAAATGAGATTGCTACTGGTA

                                   
       3107 GTGCAAATGAGATTGCTACTGGT
          1 GTGCAAATGAGATTGCTACTGGT

       3130 GCTTCCACAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30


Consensus pattern (24 bp):   
GTGCAAATGAGATTGCTACTGGTA
Done.