Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011513.1 Corchorus olitorius cultivar O-4 contig11546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4988
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.30


Found at i:615 original size:19 final size:19

Alignment explanation


    Indices: 591--629  Score: 78
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        581 TCTGGGAAAG

                               
        591 ATAAATTAATTCTTCTTTT
          1 ATAAATTAATTCTTCTTTT

                               
        610 ATAAATTAATTCTTCTTTT
          1 ATAAATTAATTCTTCTTTT

             
        629 A
          1 A

        630 ATGAATTGTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56


Consensus pattern (19 bp):   
ATAAATTAATTCTTCTTTT

Found at i:1405 original size:24 final size:24

Alignment explanation


    Indices: 1378--1425  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1368 TCTTTCACAG

                                    
       1378 CTAGTAGTCGGATTGCTTTCCTTA
          1 CTAGTAGTCGGATTGCTTTCCTTA

                                    
       1402 CTAGTAGTCGGATTGCTTTCCTTA
          1 CTAGTAGTCGGATTGCTTTCCTTA

       1426 GGGGATCGGG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.17, C:0.21, G:0.21, T:0.42


Consensus pattern (24 bp):   
CTAGTAGTCGGATTGCTTTCCTTA
Done.