Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001152.1 Corchorus olitorius cultivar O-4 contig01152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1709
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33


Found at i:1418 original size:26 final size:26

Alignment explanation


    Indices: 1389--1440  Score: 79
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1379 ACTATATAGC

                                       
       1389 TTTTTTTAAGT-AATTTTAAATAAGAA
          1 TTTTTTTAA-TCAATTTTAAATAAGAA

                                 *    
       1415 TTTTTTTAATCAATTTTAAATTAGAA
          1 TTTTTTTAATCAATTTTAAATAAGAA

       1441 AATTGACTAC


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  25    1  0.04
  26   23  0.96

ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52


Consensus pattern (26 bp):   
TTTTTTTAATCAATTTTAAATAAGAA
Done.