Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011521.1 Corchorus olitorius cultivar O-4 contig11554, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2148
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:2085 original size:19 final size:19

Alignment explanation


    Indices: 2061--2101  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       2051 AACTCACCTC

                               
       2061 ATATAGTATGAATGAAGAT
          1 ATATAGTATGAATGAAGAT

                               
       2080 ATATAGTATGAATGAAGAT
          1 ATATAGTATGAATGAAGAT

               
       2099 ATA
          1 ATA

       2102 ATCATACTAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.49, C:0.00, G:0.20, T:0.32


Consensus pattern (19 bp):   
ATATAGTATGAATGAAGAT

Done.