Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011523.1 Corchorus olitorius cultivar O-4 contig11556, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4054
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31


Found at i:1998 original size:26 final size:22

Alignment explanation


    Indices: 1952--1995  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1942 TCTGCACTTG

                                  
       1952 ATCTTGAAAGAGTAGGTTCTTT
          1 ATCTTGAAAGAGTAGGTTCTTT

                                  
       1974 ATCTTGAAAGAGTAGGTTCTTT
          1 ATCTTGAAAGAGTAGGTTCTTT

       1996 CTTGGACTTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.27, C:0.09, G:0.23, T:0.41


Consensus pattern (22 bp):   
ATCTTGAAAGAGTAGGTTCTTT
Done.