Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01011525.1 Corchorus olitorius cultivar O-4 contig11558, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3549
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31


Found at i:1306 original size:15 final size:15

Alignment explanation


    Indices: 1286--1316  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1276 CGACGTCGCA

                           
       1286 ATACAAAATCTTTTC
          1 ATACAAAATCTTTTC

                           
       1301 ATACAAAATCTTTTC
          1 ATACAAAATCTTTTC

             
       1316 A
          1 A

       1317 CCCTTTCGAC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39


Consensus pattern (15 bp):   
ATACAAAATCTTTTC

Found at i:2984 original size:23 final size:23

Alignment explanation


    Indices: 2954--2999  Score: 92
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2944 GGACGACAGT

                                   
       2954 CTTCAACATGGAGAGGTATTCGA
          1 CTTCAACATGGAGAGGTATTCGA

                                   
       2977 CTTCAACATGGAGAGGTATTCGA
          1 CTTCAACATGGAGAGGTATTCGA

       3000 AAAACTCTTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26


Consensus pattern (23 bp):   
CTTCAACATGGAGAGGTATTCGA
Done.